Ramachandran Principle: Protein Atomic Clashes vs. Phi & Psi

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  • เผยแพร่เมื่อ 22 ธ.ค. 2024

ความคิดเห็น • 126

  • @marksteve8373
    @marksteve8373 6 ปีที่แล้ว +119

    The best Ramachandran plot video out there! Many thanks!

  • @leahdavis6265
    @leahdavis6265 4 ปีที่แล้ว +17

    I just want to say here because I don't think this is mentioned enough but this video is perfect for visual learners and especially students with ADHD. This is definitely the best ramachandran plot video and visualization I have seen!
    P.S. I am a BME PhD student with ADHD who came in with a non-biology engineering background currently thrown into graduate biochemistry so if this 1 video can bring a part of an entire biochem course chapter together then you deserve to know how awesome this is!

    • @ericmartz9100
      @ericmartz9100  4 ปีที่แล้ว +4

      Thank you so much for your insight about ADHD learners, Leah. Good luck with your graduate work!

    • @abhishektripathiii
      @abhishektripathiii 9 หลายเดือนก่อน

      True :)

  • @singing.winnie
    @singing.winnie 4 ปีที่แล้ว +24

    Wow. Just wow. I’ve been struggling to imagine these angles with my head nor by looking at the textbook. This solved the problem!!!!!!! Thank you so much!!!!

    • @ericmartz9100
      @ericmartz9100  4 ปีที่แล้ว +3

      Thank you Winnie. So glad it was helpful!

  • @shivi3132
    @shivi3132 5 หลายเดือนก่อน +3

    Thank you so much for making this, i was beginning to think id never understand phi and psi angles, after your video i was left wondering why i thought i couldnt

  • @nancysong9581
    @nancysong9581 4 ปีที่แล้ว +3

    The first time I actually understood Ramachandran plot and the phi and psi angle!!! (I first came across it during first year uni and now I have graduated) It's so hard to understand without animation. Thanks a lot!!!!!!!!

  • @nabarunr3
    @nabarunr3 4 ปีที่แล้ว +3

    Noting but gratitude to you, SIr. And the best part is you enable teachers to present this material, and they can choose not to mention your name. This is truly what open knowledge is, and it cannot come from small minds. I'll strive to achieve this kind of mindset. Thanks a ton.

  • @ambar9232
    @ambar9232 4 ปีที่แล้ว +1

    Great explanation and the best thing about it is the 3D Animation which sets it apart from the other videos.

  • @m.t1446
    @m.t1446 5 ปีที่แล้ว +1

    Best explanation of Ramchandran plot on youtube. Bless your soul!

  • @rialc6238
    @rialc6238 4 ปีที่แล้ว +2

    The visualizations really helped understand this topic. This is just what I needed. I wished textbooks would have explained as you did. Thank you sir!

  • @teresavillalaz1779
    @teresavillalaz1779 2 ปีที่แล้ว

    I've read infinity of books and nothing was better explained than this! Great work, keep it up!

  • @ojaswibiswas6
    @ojaswibiswas6 4 ปีที่แล้ว +3

    I never understood this concept so well. Thank You so much this is the best possible explanation.

  • @jessicalv6442
    @jessicalv6442 ปีที่แล้ว

    Can't live without this video! Saves my life thanks!

  • @nanosciencebyjalal3793
    @nanosciencebyjalal3793 5 ปีที่แล้ว

    it's not fairrrrrrrrrrr , your channel must have millions of subscribers, you are a genius

  • @kiruthikabalasubramani8874
    @kiruthikabalasubramani8874 3 ปีที่แล้ว

    It can't be more better than this explanation...I struggled imagining all those angles.. Now I got it...Thank you sir

  • @okpolihenry983
    @okpolihenry983 3 ปีที่แล้ว

    OH MY GOD , JUST WOW . I HAVE BEEN STRUGGLING TO UNDERSTAND THIS TOPIC FOR DAYS UNTILL I CAME HERE . THANK U SO MUCH

  • @sarahihernandez5434
    @sarahihernandez5434 4 ปีที่แล้ว

    I was completely discouraged because I wasn´t unable to understand this but now I realized how it works, thanks a looooot! Cheers from México.

    • @ericmartz9100
      @ericmartz9100  4 ปีที่แล้ว

      You're very welcome! Glad it helped!

  • @soumilibera8282
    @soumilibera8282 4 ปีที่แล้ว

    The best video on Ramachandran Plots . I really want to thank you for this. I was really struggling with this . Thank you so much

  • @Tanya-xl3oy
    @Tanya-xl3oy 5 ปีที่แล้ว +4

    Wow. this video was perfect! i can confidently say i understood everything in this video having no prior knowledge. thank you!

  • @helenc40
    @helenc40 2 ปีที่แล้ว

    I understand Phi & Psi at last. Thank you! This is the best explanation I've seen.

  • @Erik-um7hq
    @Erik-um7hq 4 ปีที่แล้ว +1

    A fantastic an easy to understand illustration. Good Work!

  • @neellohitsarkar9183
    @neellohitsarkar9183 4 ปีที่แล้ว

    @Eric Martz lifesaver!

  • @Biocreator
    @Biocreator 4 ปีที่แล้ว

    best Ramachandran plot video on youtube

  • @sameloliveira6169
    @sameloliveira6169 2 ปีที่แล้ว

    Thank you, my teachers could never explain it better.

  • @qn9cmo0kjoi9
    @qn9cmo0kjoi9 2 ปีที่แล้ว

    Thank you sir so much for making this video! It's the best on TH-cam. So nice and clear! Big thanks from Taiwan. May God bless you and your love ones!

  • @nanosciencebyjalal3793
    @nanosciencebyjalal3793 5 ปีที่แล้ว

    it was the best of Ramachandran i've ever seen

  • @auroshikhamohanta1087
    @auroshikhamohanta1087 2 ปีที่แล้ว

    This video is amazing to correctly imagine the rotation of torsion angles. It really helped a lot. thank u so much for making this video.

  • @tushardhyani9007
    @tushardhyani9007 5 ปีที่แล้ว

    Best one on TH-cam for the plot

  • @subha_jit_roy
    @subha_jit_roy ปีที่แล้ว

    Best explain video in youtube after saw many video

  • @joshuawhittick4496
    @joshuawhittick4496 4 ปีที่แล้ว

    great video, love the visualisation of steric clashing

  • @ionapay6681
    @ionapay6681 4 ปีที่แล้ว +1

    This was incredibly helpful, thank you so much for creating this!

  • @soumendash3911
    @soumendash3911 3 ปีที่แล้ว

    Hey, I dint know how or thank you this is really amazing I have never seen someone giving a test after a lesson on youtube really happy for that Nice explanation too. Good start to my day.

  • @javaidchoudhary4653
    @javaidchoudhary4653 5 ปีที่แล้ว

    I watched lots of videos on Ramachandran plot but none of them make me understand . Thanks a lot sir for this well explanation. Plz make some more videos on protein structure and chemical bonding we shall remain thankful to you

  • @james4727
    @james4727 6 ปีที่แล้ว

    the animation makes it so much easier to understand, thank you for the video :)

  • @mahamali605
    @mahamali605 5 ปีที่แล้ว +1

    Best most clear and concise explanation . Many many thanks Sir. :]

  • @spkm4tube
    @spkm4tube 4 ปีที่แล้ว

    I hope, my teachers had this kind of tools and willingness to make this concept so much clear. BUT I WILL SHOW THIS TO MY STUDENTS AND TRY MY BEST.........

  • @Tiago211287
    @Tiago211287 3 ปีที่แล้ว

    This was an excellent lesson on basic biochemistry. Loved it. Thanks for this.

  • @benleohollis
    @benleohollis 5 ปีที่แล้ว +2

    4:40 is the most satisfying thing I've ever watched

    • @ericmartz9100
      @ericmartz9100  5 ปีที่แล้ว +5

      Thank you. It was fun to do. I knew for years that it was possible to show the clashes forming dynamically. Since nobody else did it, I finally got around to it.

  •  5 ปีที่แล้ว

    it's the best explanation about Ramachandran plots !. Thanks ever so much !

  • @verteeger
    @verteeger ปีที่แล้ว

    Thank you for this video with the visualisations and great explanation of what we are looking at! I feel a little bit enlightened :D Thanks again!

  • @shruti.7660
    @shruti.7660 2 ปีที่แล้ว

    Thank you. I was so confused with the understanding of phi and psi angles

  • @mvcnj9700
    @mvcnj9700 4 ปีที่แล้ว

    Really the best video help visualizing the dihedral angles.

  • @PraneetPaidisetty
    @PraneetPaidisetty 4 ปีที่แล้ว

    This video made it so easy to understand.

  • @mauriciomrable
    @mauriciomrable 5 ปีที่แล้ว

    Thank you for this video and all the support material. Amazing!

  • @apurvakmr
    @apurvakmr 3 หลายเดือนก่อน

    Am thankful for this. Sincerely, thank you.

  • @2361243
    @2361243 4 ปีที่แล้ว

    This is truly amazing.Nice animation. Thank you so much.

  • @slimmathers5665
    @slimmathers5665 2 ปีที่แล้ว

    WOW. Amazingly done.

  • @00metta00
    @00metta00 5 ปีที่แล้ว

    Absolutely sublime video; concise and coherent. This has really helped me with my understanding of these plots. Thank you so very much 🙂

  • @vahid8050
    @vahid8050 2 ปีที่แล้ว

    Very interesting and clear to understand, thank you.

  • @abhiramips
    @abhiramips 5 ปีที่แล้ว

    The video is very concise and informative. Thank you for that!

  • @SherriMSDRML-qm1pe
    @SherriMSDRML-qm1pe 3 หลายเดือนก่อน +1

    Thank you 🤠🤖🧲🇮🇳🇱🇷🧠👀🫁🌹

  • @janbrezovsky2227
    @janbrezovsky2227 4 ปีที่แล้ว

    Wonderful work! Many thanks for your work.

  • @lorbasaurus2000
    @lorbasaurus2000 6 ปีที่แล้ว

    Great visuals and explanation!

  • @jessicamartins7544
    @jessicamartins7544 3 ปีที่แล้ว +1

    Great explanation! Thank U so much!

  • @nataliepopielski1125
    @nataliepopielski1125 4 ปีที่แล้ว

    Thank you! This clarified much of how this works for me!

  • @yongshancelinene-eh1165
    @yongshancelinene-eh1165 2 ปีที่แล้ว

    What a great video. Thanks for the content

  • @siniorashani
    @siniorashani 4 ปีที่แล้ว

    That was indescribable , thanx very very much

  • @noorakhtar5536
    @noorakhtar5536 5 ปีที่แล้ว

    exceptional thank you so much! love the links to resources as well; very useful

  • @anjaligupta6180
    @anjaligupta6180 4 ปีที่แล้ว

    thank you soooo very much sir...i express my heart felt gratitude to you for making this video....its a saviour....!! thanx a tonn....love from india🙏🙏

  • @giammarcoferrari1738
    @giammarcoferrari1738 4 ปีที่แล้ว

    Thank you very much. I have no other words.

  • @vipulkumar7035
    @vipulkumar7035 4 ปีที่แล้ว

    Very nice video. Keep up the good job.

  • @jayamalwanniarachchi1437
    @jayamalwanniarachchi1437 4 ปีที่แล้ว

    simple and amazing explanation.. Thnak you sir

  • @mayanksangam9205
    @mayanksangam9205 4 ปีที่แล้ว

    This is fantastic and really helpful. Thank you.

  • @suprajaganganapalli5880
    @suprajaganganapalli5880 4 ปีที่แล้ว +1

    thank you for the video really helping to understand concepts i have seen many videos and books to understatnd it bu t i felt better

  • @anjaligupta6180
    @anjaligupta6180 4 ปีที่แล้ว

    hello sir i didnt get just one thing -
    in the graph
    psi is fixed at -165 ° it should occur on x axis and angles -70° to -170° should be the range on y axis
    n where phi is fixed at -80° it should cut through y axis ...
    right
    plz enlighten me with the solution to this query...!!
    thnk u

  • @rialc6238
    @rialc6238 4 ปีที่แล้ว

    Sir, could you please tell where in the Ramachandran plot do beta turn conformations (type I and II) and conformations of unfolded proteins lie?

  • @Sen46552
    @Sen46552 4 ปีที่แล้ว

    Ty for the video. The quiz was also helpful!

  • @majakornaj2264
    @majakornaj2264 4 ปีที่แล้ว

    great video! really helped me understand the concept. thank you so so much!

  • @leilariver2036
    @leilariver2036 5 ปีที่แล้ว

    Enfin quelqu'un qui sait expliquer ce modèle.

    • @ericmartz9100
      @ericmartz9100  5 ปีที่แล้ว

      Merci!

    • @olujideakinbo5094
      @olujideakinbo5094 4 ปีที่แล้ว +1

      @@ericmartz9100 An angle is described relative to a reference. When you describe the angle of Phi what is your reference? Also when you describe the angle of Psi, what is your reference?

  • @bioethno3219
    @bioethno3219 6 ปีที่แล้ว

    Thank you for this video, I understood this part of my course thanks to you!

  • @fontexstudios
    @fontexstudios 2 ปีที่แล้ว

    Thanks for the video Eric. What program did you use to animate the bonds with electron clouds and the clashes? very nice to visualize.

    • @ericmartz9100
      @ericmartz9100  2 ปีที่แล้ว +1

      I'm sorry I forgot to credit Jmol. All molecular graphics were done with it: Jmol.org.

  • @b.b.bhattarai9198
    @b.b.bhattarai9198 6 ปีที่แล้ว

    Good explanation. Easy to understand

  • @olujideakinbo5094
    @olujideakinbo5094 4 ปีที่แล้ว

    An angle is described relative to a reference. When you describe the angle of Phi what is your reference? Also when you describe the angle of Psi, what is your reference?

  • @abhishekchatterjee1709
    @abhishekchatterjee1709 6 ปีที่แล้ว

    Very nice demo. Thank you!

  • @sunghjung9621
    @sunghjung9621 5 ปีที่แล้ว

    Love the visuals

  • @amirkiamehr1073
    @amirkiamehr1073 4 ปีที่แล้ว

    This is awesome !! , Thank you so much !!!

  • @michellearchuleta7881
    @michellearchuleta7881 5 ปีที่แล้ว

    Amazing video! Thank you.

  • @vanessakeating
    @vanessakeating 5 ปีที่แล้ว

    Awesome video!

  • @johnl6361
    @johnl6361 5 ปีที่แล้ว

    Thank you so much for this video!

  • @elississy177
    @elississy177 ปีที่แล้ว

    awesome video !

  • @arefsalehi2821
    @arefsalehi2821 3 ปีที่แล้ว

    That was amazing!

  • @paulinbarajpillai3569
    @paulinbarajpillai3569 4 ปีที่แล้ว

    Thank you very much very clear explanation

  • @arrantrainor3799
    @arrantrainor3799 4 ปีที่แล้ว

    How did you create these animations?

  • @goliadkin830
    @goliadkin830 6 ปีที่แล้ว

    Very good explanation! Thanks!!!!!

  • @amirkiamehr627
    @amirkiamehr627 5 ปีที่แล้ว

    So helpful especially the simulation

  • @geetarautela1
    @geetarautela1 6 ปีที่แล้ว +1

    Nice explanation👍👍👍👌👌👌👌☺️☺️☺️☺️thank you sir

  • @zayilsalazar5749
    @zayilsalazar5749 4 ปีที่แล้ว

    Thanks, I finally understood it!

  • @durgamthirupathi1838
    @durgamthirupathi1838 4 ปีที่แล้ว

    Wonderful video

  • @tamer4456
    @tamer4456 2 ปีที่แล้ว

    great explanation thanks a lot.

  • @damh7621
    @damh7621 4 ปีที่แล้ว

    Super helpful! Thanks.

  • @navidhoseini8680
    @navidhoseini8680 6 ปีที่แล้ว

    thanks you very much. the best explanation...

  • @JP11994
    @JP11994 6 ปีที่แล้ว

    Amazing explanation thank you

  • @OliviaCarr-dc8vn
    @OliviaCarr-dc8vn 2 หลายเดือนก่อน

    aww these comments are so sweet, making my fingers hurt from liking all of them

  • @narendra5769
    @narendra5769 ปีที่แล้ว

    Pls upload more video with animation thanks ❤

  • @sofiapallais6479
    @sofiapallais6479 4 ปีที่แล้ว

    Excelent! Thank you so much!

  • @현지민-r4k
    @현지민-r4k 5 ปีที่แล้ว

    thank you so much. it was very helpful.

  • @_toom
    @_toom 5 ปีที่แล้ว

    Thank you!

  • @MrMigzz29
    @MrMigzz29 4 ปีที่แล้ว

    Amazing!

  • @anupammishra5443
    @anupammishra5443 3 ปีที่แล้ว

    Good visualization

  • @Kaur_2343
    @Kaur_2343 3 ปีที่แล้ว

    Mind blowing😱😱😱😱😱

  • @abhisheklakhera8322
    @abhisheklakhera8322 4 ปีที่แล้ว

    thank you so much !