Genome-wide Association Study (GWAS) analysis in TASSEL Software (GUI).

TASSEL is one of the statistical software's to conduct association mapping such as General Linear Model (GLM) and Mixed Linear Model (MLM). In this tutorial, I will show you how to install TASSEL software and preprocess SNPs to run association analysis in TASSEL. For detailed information about TASSEL, please visit: www.maizegenetics.net/tassel.
R-script to plot GWAS results link:
github.com/mohsinali1990/My_s...
Missing data imputation using Beagle software link:
• Imputation of missing ...
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[@hollandwu1929]

thank you！it's useful !👍

[@vitalscience9072]

Good one

[@arnenable]

Hi, why in R-Script I got "Error in rep.int(seq_along(unique(d$CHR)), times = tapply(d$SNP, d$CHR, :
invalid 'times' value", ? Could you help me?

[@chandrapaul1117]

In Tassel example: mdp-population structure file, how to create this covariate file?.

[@muhammadazharnadeem2682]

Dear I want to make circular Manhattan plot, could you share the codes with me?

[@danakumara.t6415]

how u have created a population structure.txt

[@MyMasaka]

Can do a video on GWAS with TwoSample MR?

[@MohsinAli-xn4cl]

I will try if I have time in the near future.