wonderful tutorial, but I am using TASSEL 5.2.64 and the transformation step of genotype data is no longer an option. The new and equivalent option under the "Data" menu is called "Numerical Genotype". But, I cannot find an option for the second transformation using PCA. Any recommendations?
Hi i am working on TASSEL software for association mapping using SSR markers. when we have polymorphic allele means A,B,C,D or more with which numbers we should denote these alleles. Secondly what do u mean by number of components because when i reach on this step and do PCA software get struck and does not give any result.
Thanks for this tutorial. But I've experienced a problem with the locus. Even though I use a map, the loci remains unknown. I was wondering if you know how to format the input file so that the locus position would appear.
Thanks for the video. I am a kind of person with no exprience in association mapping but would like to conduct few research that involves AM. Would you please help me in this regard?
Nice video. Useful for diversity and association analysis
well explained about Tassel software running... useful and informative vedio
Well explained & useful one.
useful and informative video
good experience this videos.
Nice and simple thank you
nice video..
Nice video! Thank you!
Leaned to work with the software.Thank you.
nice video
informative video
wonderful tutorial, but I am using TASSEL 5.2.64 and the transformation step of genotype data is no longer an option. The new and equivalent option under the "Data" menu is called "Numerical Genotype". But, I cannot find an option for the second transformation using PCA. Any recommendations?
TASSEL software had been well explained
Hi i am working on TASSEL software for association mapping using SSR markers. when we have polymorphic allele means A,B,C,D or more with which numbers we should denote these alleles. Secondly what do u mean by number of components because when i reach on this step and do PCA software get struck and does not give any result.
Can You kindly reply to this query I am having the same issue of arranging genotypic data with polymorphic allele
well understood!!!
Nice
nice and explains how to use the softwere
Thanks for this tutorial. But I've experienced a problem with the locus. Even though I use a map, the loci remains unknown. I was wondering if you know how to format the input file so that the locus position would appear.
Thanks for the video. I am a kind of person with no exprience in association mapping but would like to conduct few research that involves AM. Would you please help me in this regard?
Hi , I noticed that you have chosen 1 for a parent allele and -1 for the other parent allele , what about heterozygous allele ???
In this system, heterozygous calls would usually be marked with zero.
I think this video deserves to get citated. lol
I am using TASSEL first time when I upload my file on TASSEL, I am getting an error. I don't know how to fix it?
Can you please help
Can you kindly explain the excel data format used here.
CAN YOU PROVIDE SOFTWARE OF TASSEL VERSION 4.0
nice video