Association Mapping using TASSEL Software | An easy tutorial in English | By Dr Rashid M Rana
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- เผยแพร่เมื่อ 25 มิ.ย. 2024
- Here in this video, we have demonstrated the use of Tassel Software (v. 5, Download: tassel.bitbucket.io/). You will learn about the input file format and ways to import these files. You will learn how to make K-Matrix from genotypic data. The MLM and GLM analyses has also been demonstrated here in this video. You will know how to do LD analysis and view its plot. We have also demonstrated the making of tree and saving it in various forms. If you have any query, please contact us.
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Great video sir. Well i have -, 0, 1, 2 how do i denote the A and C in this case?
Very informative-thanks
So good sir! 🎉
Very Informative session
It's really very useful information....
Thanks it was a very useful video. I was looking out for this kind of informative video for TASSEL for a long time.
Excellent tutorial
Thank you so much sir
Great Job, can I use this software to analyze polypeptide binary data (Hordein) by converting it in to an allelic format like what you did for the SSR marker data? and, how can I name the position?
Great
Please I have a question on how you get the Q matrix to attach, that's from structure software for population. Thank you
very informative and helpful for the students and researchers
Thanks dear sir
You are doing great job sir to share your knowledge with others as "Knowledge increases by sharing not by saving".
So nice of you
nice job Dr sab
Thanks dear sir
Thankyou
So great sir💕💕😙😙
Thanks dear
can this software be used for dominant markers like SCoT or ISSR markers.
Hello, I have a question. I have a SNP data file. And heterozygotes are included in the data. Can I use 2-base format? Like AT, CT, GC, AA, etc
hello sir plzz tell me how can genotypic data for my analysis ..i have 518 sequences of virus ...having 8 genotypes..
Hello sir
I we got very low e value in MLM (many association) model of association analysis. What we do to increase the p value
Hi, it’s a wonderful video, can you give a lecture on gwas?
Thanks encouraging comments, I'm preparing for that, stay tuned.
Regards
can you make a video on eGWAS?
How can we do it for polyploid species using SSR. Bcz in polyploid more than 2 bands are seen..
Sir, How to get expected heterozygosity and observed He for multi loci SSR markers ..?.. by binary input method …. Suggest software sir
Great job, can you suggest the way to deal with missing SSR or SNP data???
As far as I know -999 is used for missing values... I have no experience so you will learn by trial-error ..
@@firatkurt4289 hello, I m very new to this concept, can u plz let me know what it means The R2 model with and without SNP is?
Respected sir, Am also having SSR data of 48 genotypes of wheat. I have 0,1 binary matrix. I can’t understand that how to denote A and C to the genotypes using that matrix
You can use A for 1 and C for 0
Respected sir, Am also have SSR data of 80 genotypes of rice. I have 0,1 binary matrix. when I use the kinship command then it shows error null and same with the create tree command please help me with this.
Convert your binary data into nucleotide data, e.g. A for 0 and G for 1, then input data as hmp format.
I'll upload a tutorial on that soon
Would you please guide on how to convert ped and map files to Vcf
Dear Sir,
Thank you for sharing this video. I understand about this. But I can't understand formatting genotype data in excel. I have 50 different rice's data but I can't input property format in excel for tassel Software. I want to MLM analysis for my thesis paper. help me sir input the data format in excel. Please share your email I'd. I send my data. Thank you sir.
rashid.pbg@uaar.edu.pk
@@plantsciencetools9482 i am facing similar issue kindly suggest me what i do
when i save file as tab delimited but when i open this file assembly Colum found to be have 2 sub column
Hello sir
Hi, thanks for your comment