I tried loading the file and also clicked the single file out so it all comes in. The problem is that the software is not responding every time I want to add on the data, probably because it is huge. Any advice on that?
Unfortunately I can't share that specific volume since the research on it is still in progress and unpublished. I'd recommend going to morphosource.org and search for some taxa of interest to you!
Loading the first image should load the full stack if 1.) they are all in the same folder in order and 2.) you uncheck the single file option when you add the data (see 2:46). There's another option you can try in the newer version of Slicer as well. Install the SlicerMorph extension and use the ImageStacks module. It lays out all the options pretty clearly for loading in stacks and gives you more options.
Hi, thank you for your video tutorials on slicer. Currently i am trying to load a single 16Gb .TIF file into slicer but doesn't load it as a volume, but rather a 4mb 2D image. I know the file works as when i load it on to FIJI it loads as a stack. Do you have any suggestions
hi thank you but i have a problem in loading dcm data. when i import the folder containing some dcm files, it imports all the dcm files seperately as each file correspond to a seperate patient. what should i do please?
Hard for me to say, as it could be a lot of things. My recommendations would be to 1.) Make sure nothing else is in the folder with the DICOM slices, 2.) Make sure you are using the DCM import tool and not the data import tool, and 3.) Check that you have the most recent stable version of Slicer installed (4.11).
I was having an issue with importing my DCM files as well; I tried the DICOM import by selecting all files, normal import by selecting all files, drag-and-drop all selected files at once onto the Volume Rendering window, doing the same with the folder which contained the DCM files, and nothing worked. What ended up working (for me) was the first technique outlined in the video: normal import (for some reason), choose the first file in the series, show options, uncheck "Single File", them load them in. Again, I'm not sure why my DCM files were having trouble importing, and I'm not sure why using the normal, not DICOM, import function ended up working, but it worked for me in my specific situation.
thanks a lot
I tried loading the file and also clicked the single file out so it all comes in. The problem is that the software is not responding every time I want to add on the data, probably because it is huge. Any advice on that?
Increasing the memory of your computer might help.
Thanks for tutorial, can you add link to this volume used so I can follow tutorial directly?
Unfortunately I can't share that specific volume since the research on it is still in progress and unpublished. I'd recommend going to morphosource.org and search for some taxa of interest to you!
For loading images, once you've loaded the first image, how to you load the rest to create a volume out of them all?
Loading the first image should load the full stack if 1.) they are all in the same folder in order and 2.) you uncheck the single file option when you add the data (see 2:46).
There's another option you can try in the newer version of Slicer as well. Install the SlicerMorph extension and use the ImageStacks module. It lays out all the options pretty clearly for loading in stacks and gives you more options.
Hi, thank you for your video tutorials on slicer. Currently i am trying to load a single 16Gb .TIF file into slicer but doesn't load it as a volume, but rather a 4mb 2D image. I know the file works as when i load it on to FIJI it loads as a stack. Do you have any suggestions
Even if it shows up as a single file, you may still have to uncheck single file in the volume options. That would be my best guess but not 100% sure.
hi
thank you
but i have a problem in loading dcm data.
when i import the folder containing some dcm files, it imports all the dcm files seperately as each file correspond to a seperate patient.
what should i do please?
Hard for me to say, as it could be a lot of things. My recommendations would be to 1.) Make sure nothing else is in the folder with the DICOM slices, 2.) Make sure you are using the DCM import tool and not the data import tool, and 3.) Check that you have the most recent stable version of Slicer installed (4.11).
I was having an issue with importing my DCM files as well; I tried the DICOM import by selecting all files, normal import by selecting all files, drag-and-drop all selected files at once onto the Volume Rendering window, doing the same with the folder which contained the DCM files, and nothing worked. What ended up working (for me) was the first technique outlined in the video: normal import (for some reason), choose the first file in the series, show options, uncheck "Single File", them load them in. Again, I'm not sure why my DCM files were having trouble importing, and I'm not sure why using the normal, not DICOM, import function ended up working, but it worked for me in my specific situation.