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Hi, thanks a lot for this video. Is there any way to accurately warp to specific configurations of certain specimens on the PCA? The best way I can think of is assuming -100 and 100 on the PC slider correspond to the lowest and highest coordinates of the specimen on those extremes of the PCs and scale the PC slider for each specimen accordingly, which is really tedious and uncertain.

Wow, I had no idea you could Volume Render the preview scan. Great video! You can also drag and drop a scan data folder on top of Slicer and it will prompt you if you want to load it using ImageStacks, it's a minor timesaver but handy. Thanks!!!

Hi @VirtPaleo, awesome tutorial and research! One of the simplest ways to insert a point to a curve is: - have the Markups tool active - hover over the curve so that it gets highlighted (like at the 8:42 timestamp) - Ctrl (Cmd on a Mac) + left click on the curve at the desired location should insert the point there

I tried loading the file and also clicked the single file out so it all comes in. The problem is that the software is not responding every time I want to add on the data, probably because it is huge. Any advice on that?

Is there a way to export the animation of PC warping?

Quick question re: closed and open curves. Are the points generated when placing an open or closed curve all considered fixed landmarks for curves? Or are they always considered semi landmarks? I was also wondering if I can start and end an open curve using fixed landmarks from the regular control points? That is, I have 14 fixed landmarks on some fossil teeth, and I'd like to add some curves to the already existing coordinate data from my fixed landmarks to better capture the variation I am interested in. Could I used two landmarks from the already established 14 fixed landmarks as the starting control point and the ending control point for an open curve?

Your videos are always very useful, thanks 👍🏻

I'm going to have to watch this several times. Thanks for explaining.

Thank-you for the nice tutorial.

for some reason, it doesnt work with .json files for me :(

Thank you so much, these are incredibly handy for anyone trying to jump into slicer without any prior experience.

would like to know how to make the data set by plotting on my images with in 3-D slicer to create a landmark set for geometric analysis. I understand how to plot the landmarks, but l'm not sure how to export the landmark data per each individual case, to later combine all for geometric analysis as a data set

what is the best way to smooth out the spikes created in stl files?

Thank you for this excellent presentation, you have saved me a lot of headaches!

👍Great beginner video. Thanks!

Amazing content!

Mahalo for sharing

Thank you very much

which one is better making maual landmarking or use pseudoLMGenerartor of slicermorph? Please give some advice

So to produce the cropped version of yor daraset, you're gonna still need a machine with a lot of ram, Correct?

Hello, I cannot find the data for Volume Information in the .xtekct file which comes with Nikon scans. Do you maybe know what could correspond to Dimension, Spacing, Origin etc.? I have for example voxels and size.

good work!! very nice videos

What an excellent walk through of the plugin!

Wow, this will be super helpful to me and some of my colleagues! The video is very well made, and, except for the analysis part, which I am looking forward to seeing, there is nothing that a new user might miss. Congratulations!

Thanks for this video, it's extremely useful.

Where can I find some sample CT datasets? What is the format that they usually come in? Is it possible to get the voxel data in text format such as: X, Y, Z, R, G, B

Super helpful! Thanks Anne!

Wow! Image Stacks is greatness! Thank you

right on thank you for sharing!!

Hello Sir, I'm having a problem with the mesh data, I can't figure out what tool to use to find the problem. so, I hope you give some suggestion about the tool.

Is there a mirrorless camera good for photogrametry

For loading images, once you've loaded the first image, how to you load the rest to create a volume out of them all?

Thanks you very muche for your tuto ! I'm trying to segment the ethmoid of a cat but i'm struggling a lot, did you already manage to segment an ethmoid ?

thanks a lot

Hello, thank you for your great video ! I have an issu with the vector to scalar volume, i can't click on the input vector volume, do you know why ?

This is a lifesaver!! Thanks so much for an awesome video!

Thanks for the tutorial! You mentioned using a tablet; presumably, you can't use an iPad for this, no?

Hi, thank you for your video tutorials on slicer. Currently i am trying to load a single 16Gb .TIF file into slicer but doesn't load it as a volume, but rather a 4mb 2D image. I know the file works as when i load it on to FIJI it loads as a stack. Do you have any suggestions

I'm so glad I found your channel!

Instead of those fake ice cubes you can use transparent plastic caps from rinser bottles, for example. I do this all the time, but I use transparent caps from shaving foam.

Thanks

I'm going to be making a turntable project with Unreal 5 and I think I'm going to use a vinyl turntable to help me. This is a great and very helpful video and I'll share it with my fellow game art students. :)

I've been thinking of writing a script to compare two objects. Say you have scans of two similar bones from two closely related species and you want to visual the similarities and differences. Blender could place both scans at the same location then apply a Boolean difference. The problem is getting the rotations to align. I think it could program a goal seeking algorithm to minimize the volume of the Boolean difference. I have to be careful that the goal seeking does not get caught in an infinite loop. Do you know if anyone has already created something like this?

hi thank you but i have a problem in loading dcm data. when i import the folder containing some dcm files, it imports all the dcm files seperately as each file correspond to a seperate patient. what should i do please?

Thank you for this tutorial!

it was very useful, thanks

Cool

Thx a lot, i am forever in your debt

Thanks for tutorial, can you add link to this volume used so I can follow tutorial directly?

where i can sell surface scanning ?