How to install Qiime2 via WSL (Arabic) | كيفية تنزيل Qiime2 على نظام تشغيل ويندوز
ฝัง
- เผยแพร่เมื่อ 8 ก.พ. 2025
- Step 1: Turn on the windows subsystem for Linux option by searching windows features in the start option and scroll down and search for "windows subsystem for Linux" and enable the option.
Step 2: Open powershell and type "wsl --install" to install windows subsystem for linux by default ubuntu will be installed then open microsoft store and type Terminal app and download it and choose ubuntu by default
Step 3: Once installed update the ubuntu system using "sudo apt-get update" and upgrade the system using "sudo apt-get upgrade" command.
Step 4: download Anaconda for ubuntu the latest version www.anaconda.c... "Anaconda3-2022.10-Linux-x86_64"
Step 5: open terminal and type "sha256sum Anaconda3-2022.10-Linux-x86_64"
Step 6: Install the downloaded package using "bash Anaconda3-2022.10-Linux-x86_64.sh".
Step 7: After installing create the conda environment using the "conda create --name my_env python=3.9" .
Step 8: Then activate the created conda environment using "conda activate my_env" .
Step 9: Now we can download the QIIME 2 software package using " wget data.qiime2.or... " command.
Step 10: Now lets create the QIIME 2 environment using "conda env create -n qiime2-2022.11 --file qiime2-2022.11-py38-linux-conda.yml".
Step 11: Finally activate the QIIME2 environment using "conda activate qiime2-2022.11".
Step 12: confirm the installed QIIME 2 software by “qiime info” command.
Hi
Thank you for your video
But I have a problem, I couldn’t extract anaconda after installation
Hello thanks for your comment
I suppose when you downloaded the anaconda package manger some kind of interruption occur during the downloading process so you may erase it and download it again using terminal if my assumption is wrong can you specifically tell me what is the problem in Installation
Hi again I'm really sorry for replying late I was having a seminar for my graduation project if you still facing the same problem would you like to have a Zoom meeting or something like this to understand the problem more accurately. because I don't know the reason why you can't extract anaconda on your system
@@karimabdelaziz51 hey, Thank you so much, everything is okay now and I am working on Qiime2, thank you for your video it is so useful and waiting for others relate to Qiime2
@@hadeerismail5389 you're welcome glad to hear everything is ok good luck with your analysis
Hi,
I have a problem while trying to assign this command
qiime2-2023.2) /Anaconda_for_Linux$ qiime feature-classifier classify-sklearn \
--i-classifier gg-13-8-99-515-806-nb-classifier.qza \
--i-reads 5_rep_seq_deblur.qza \
--o-classification 6_deblur_taxonomy.qza
I got this message:
Plugin error from feature-classifier:
The scikit-learn version (0.22.1) used to generate this artifact does not match the current version of scikit-learn installed (0.24.1). Please retrain your classifier for your current deployment to prevent data-corruption errors.
Debug info has been saved to /tmp/qiime2-q2cli-err-4theyjvx.log
Could you recommend any solution, please?!