I am using discovery studio following your tutorial. I have few questions. i want to do the simulation of a complex molecule. i docked two proteins and now I have to do the simulation. I took the chain A of one protein and docked my target protein into it using Patch dock server. after the docking I found multiple chains. I needed only two. I don't know how to give the name to the chain of my target protein in discovery studio visualizer. and my other question is should I continue with simulation using all the chains in the complex of just take the two docked chains in the complex. Please help
As per my knowledge os concerned, Only docked chain complexes are needed to carryout the simualtion because you need to find out the stability while PPI process.
Can you explain the spaghetti model more? What do the different colors show ?
I am using discovery studio following your tutorial. I have few questions. i want to do the simulation of a complex molecule. i docked two proteins and now I have to do the simulation. I took the chain A of one protein and docked my target protein into it using Patch dock server. after the docking I found multiple chains. I needed only two. I don't know how to give the name to the chain of my target protein in discovery studio visualizer. and my other question is should I continue with simulation using all the chains in the complex of just take the two docked chains in the complex. Please help
As per my knowledge os concerned, Only docked chain complexes are needed to carryout the simualtion because you need to find out the stability while PPI process.