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Even after filling the gap in between the protein sequence, I am getting broken lines in my structure. How to fix it?

how can i get the link to download dynoplot

How do I recognize amino acids in the residues of binding site for a different proteins?

Great singing my friend!! Like 2

How do you know what net charge to add to the ligand during preparation? Should it always be 0? For example, I have downloaded ATP from PubChem. It has several deprotonated phosphate groups, do I need to specify in Chimera the negative3 charge? Thank you!

Sir why I can't paste the smiles from pubchem to ucsf chimera

I have a.a residues more than 5000, what to do in this case?

I have a.a residues more than 5000, what to do in this case?

​ @shayonbh_molmod hi can you please let me know how can i perform cross-correlation for a complex a receptor with small molecule ligand. as ligand has only one residue and donot contain CA . thank you.

I love you

For IUpred which score should I really look into the Iupred score or the ANCHOR score for predicting the IDR

I am new to bioinformatics, my question is what if % identity and Query coverage is less but the GMQE and Qmean score is good?, which factors are more important than the other when deciding on a good model? Again what does it mean when your swiss model has no QSQE score?

Can you explain the spaghetti model more? What do the different colors show ?

Hi sir，what should i do if swissmodel cannot find any matching template，because i am trying to predict a heteropentamer

Very best…! Amazing

During registration process.... We have to submit a academic e mail id.. But i don't have.... What should i do

Hello sir. what should be the selection parameter to be taken in to consideration for selecting template and what should be the percent identity for the template?

Having laboured through 3 other YT tutorials on this exact same topic, I can say this is far and away the best tutorial. I am left wondering if the other presenters actually knew what they were talking about. This tutorial is authoritative, straightforward and well presented - excellent stuff. Thank you.

Congratulations on the tutorial: I have a question How do I search for homology of a ligand that has no Fasta sequence?

so good sir

Great tutorial video. Thank you for creating this content.

I have dipole.xvg file for a protein , generated using gromacs. I will be a grt help if u tell me how to visualize THAT dipole moment along with protein in vmd!!!

There is an error shown - [Error 13] permission denied: complex.pdbqt. How to rectify???

Sir, is it necessary to validate proteins secondary structure using Prochek after loop refinement?

Plz make a video on how to do metal complexes docking

How to add atoms on missing residues?

i hope that you kindly share the R code sir, or your gituhub which posted about this code

It was very useful, thanks so much :")

Thank you. Please how can I get my binding site for command prompt

Thank you sir for the amazing video.

Good afternoon, could you send me the link you put in the url, please.

If I pass it’s coz of you thanks

Can we change Residue 1 to Residue number 96 but amino acid residue of whole chain is remain same as previous

Very informative lecture.

actual docking: 10:37

Thanks very much for this tutorial professor. Please Sir after doing redocking, if your ligand aligns with the cocrystallised ligand but doesn't have a good RMSd value which parameters can you modify to have a perfect alignment which will lead to a good RMSd value? Thanks

Can we change or alter the residues numbering in pymol?

Thank you very much. Could you let me know, how I can do this when missing resides are in the middle of protein?

Please Make a tutorial on complete MD Simulation..

Great job sir

How download auto dock vina.last step auto dock does no work.for window 10

Hi. How can I replace one metal with another on chimera?

Thank you Shayon

THANK YOUUUUUUUUUUU :')))))))))))))))))))))))

Thank you so much. Helped me a lot

best tutorial ever. im fully statisfied thanks alot

thanks so much for this tutorial. can swiss model be use to add missing residues in protein structure obtained from PDB

Very nice explanation, thank you very much!

Very useful guide, helped a lot. Thank you Mr.

hello sir, I am using MacBook Air M1 which MGL tools is not available, can I use UCSF chimera as an alternative for MGL tools?