EP 2 | POST DOCKING ASSESSMENT by visualizing 2D and 3D Protein-Ligand interactions
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- เผยแพร่เมื่อ 11 ก.ย. 2024
- Hi,
I am Dr. Dweipayan Goswami,
Welcome to my TH-cam channel "Learn at ease"
I will be uploading animated videos related to biochemistry for the Under Graduates and Graduates purely based on the information form the traditional text books
I will also upload videos in the subjects of Microbiology, Biotechnology, Immunology etc.
If you like the concept, please subscribe to my channel 'LEARN AT EASE'
Links:
Maestro Free : www.schrodinge...
Discovery Studio Visualizer : discover.3ds.c...
PLIP : plip-tool.biot...
Protein Plus : proteins.plus/
Dr Dweipayan Goswami, thank you very much! Your video help a lot to understand!
This is absolutely terrific! Thank you! You have made this material quite clear and accessible.
You're amazing. Thank you!
Dr Dweipayan Goswami. Your videos are amazing, I am new to Linux, and using your tutorials, I was able to install GMX to use the GPU parallel calculations. Thank you very much !!!
Yoo thanks !!
Nice Tut.
Thanks a lot for such a great video. Learnt a lot. Am new to comp bio and have switched from Zoology to Comp.Bio. Could you please guide as to how to ease the process of learning comp.bio in a better way.
Thank you very much sir
But I have a question what is the importance for insert the pose 1 in maestro why we are not directly inserted this pose to protein plus server or plip interaction profiler ??
Please sir answer
I am trying to figure that out now as well. Did you ever find the answer? I checked the pose1.pdb file in a text viewer and indeed the ligand atoms look to be prefixed properly with "ATOM" as opposed to "HETATM" so that is not the issue. Also, PyMol was just showing the protein only at first and not the ligand so I foudn that you can select "All States" in Pymol to see both...
Hey, Can u please tell me how long it takes to internally validate my schrodinger web account ?
Will take a day atleast