Hi Vincent. Thank you for the presentation. i work with multiple files (>300). I noted that Prokka generates a directory for each file. How do i rename the gff of each file whithout doing individually? after remaining, what command can i use to group the renamed gff files under one directory?
@Sindiswa you can include a command that will copy the gff files to a separate directory. For eg if the directory created is sample1 then the gff file will be sample1/sample1.gff , You can then copy and rename to a different directory cp sample1/sample1.gff targetdirectory/newname.gff
Hi..Vincet sir, Your presentation is really nice and Helpful. I am requesting to you for make detailed video on- before starting step of module load anaconda/3 and how to create and setup environment for spades_out.
Great work brother, keep it up
Hi thanks for the nice presentation. How can I determine the protein id so I can map the results to other annotation tools eg RAST or PGAP
You get the list of proteins from the .faa file or the .tsv file.
Hi kindly do one for GWAS
awesome
Hello Vincent, this is a nice presentation. Is there a way I can get in touch with you directly? A LinkedIn link or email perhaps?
Hi Vincent, I am getting an error of cant locate Bio::Root::Version.pm in Prokka. I want to annotate a batch of 114 genomes. Pls help me. Thanks
Please send the error message to my facebook page. And lets resolve it there web.facebook.com/Bioinformatics-Coach-100614805459525
Hi Vincent. Thank you for the presentation. i work with multiple files (>300). I noted that Prokka generates a directory for each file. How do i rename the gff of each file whithout doing individually? after remaining, what command can i use to group the renamed gff files under one directory?
@Sindiswa you can include a command that will copy the gff files to a separate directory. For eg if the directory created is sample1 then the gff file will be sample1/sample1.gff , You can then copy and rename to a different directory
cp sample1/sample1.gff targetdirectory/newname.gff
Hi..Vincet sir, Your presentation is really nice and Helpful. I am requesting to you for make detailed video on- before starting step of module load anaconda/3 and how to create and setup environment for spades_out.
Thanks for the suggestion Rakesh. I have a video that shows how to set up anaconda3 . th-cam.com/video/AshsPB3KT-E/w-d-xo.html
Thank you sir..for all the wisdom you shared with people like us who's new comer in the field of applied bioinformatics.