Excellent videos! However: I am always ending up with [18:25:14] Could not determine version of minced - please install version 2.0 or higher There seems to be a conflict with java as java -version does leads to "cannot execute binary file: Exec format error" Help!
Thank you for the fantastic tutorials on different bioinformatic approaches. As beginner, I have learnt a lot from your tutorials. I request if you could kindly do a tutorial how to carry out genome annotation of eukaryotes, starting from software installation upto the annotation process.
Hi! Thanks for the video. It's taking forever to solve the environment when I ran command to download prokka tool. here is the command I used conda create -n prokka -c bioconda -c conda-forge prokka Could you please suggest any solution. Thanks in advance
Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: - This is where it's stucked
Excellent videos!
However: I am always ending up with
[18:25:14] Could not determine version of minced - please install version 2.0 or higher
There seems to be a conflict with java as java -version does leads to "cannot execute binary file: Exec format error" Help!
I love this guy
thank you it was very helpful. I was wondering if you could do a video on unicycler, it would be very helpful as well.
thank you coach, I have one problem, when I run the annotation command in the output folder I cannot see the .gff files
It should be there. Try and repeat the commands
Thank you for your nice presentation.
You are welcome
It is failing to solve environment by channels_repo....
And taking long time(1hr++) to solve environment by repo....
What to do
Give the command you used for the installation
Thank you! Very informativ and helpful. Best
You are welcome
Thank you very informative tutorial about the Prokka tool for genome annotation. You have made it so simple to understand the basics.
ListUtil.c: loadable library and perl binaries are mismatched (got handshake key 0xdb00080, needed 0xed00080). What does this mean? Kindly help
Can u please make same kind of video for alphafold2
Thank you for the fantastic tutorials on different bioinformatic approaches. As beginner, I have learnt a lot from your tutorials. I request if you could kindly do a tutorial how to carry out genome annotation of eukaryotes, starting from software installation upto the annotation process.
Very helpful, thanks. Is there a way to know the function of the hypothetical proteins?
Thanks for the video. However, I follow the step even adding --genus when running the annotation but my result only shows CDS and tRNA?
Hi! Thanks for the video. It's taking forever to solve the environment when I ran command to download prokka tool. here is the command I used
conda create -n prokka -c bioconda -c conda-forge prokka
Could you please suggest any solution.
Thanks in advance
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: -
This is where it's stucked
@@rehnumasejuty7274 Try using updating conda
Why do you use publicly available data instead of using the data you produced during the lecture in which you showed to do genome assembly