can you help me, please? i cannot create a new unix user after re-installing ubuntu. i could not use ubuntu after i forgot my user password, so i removed and re-installed ubuntu (including anaconda & qiime, i believe). now i cannot even create a new user, and somehow i can log in as a root user. this is very confusing for me as a new user. how can i resolve this problem, please?
Thanks so much for this video! I struggled to install qiime2 until I watched your tutorial. Even though there are still some intuitive steps with a learning curve, I was able to do it! Now I just have to try to install the latest version in a new environment 😅!🙏🏻🙏🏻
after installing the anaconda, conda command not found is showing i even tried the way you have given in the comments below its not working.. furthermore the system is not letting me choose between yes or no it directly chooses no and the conda is not activated
Hello, I missed typing yes in the 2:26 step, could you let me know how to initialize Anaconda3 again? I tried to use bash Anaconda3-2021.11-Linux-x86_64.sh, but it says the file already exists.
Write your shell name to the "YOUR_SHELL_NAME" part. You can learn your shell name with `echo $SHELL`. In my case, the shell name was "bash". `eval "$(/home/ocetiner/anaconda3/bin/conda shell.YOUR_SHELL_NAME hook)"` and you can run the `conda init`command.
Im trying to install Qiime2 amplicon distribution using anaconda powershell, all steps are running fine till I download QIIME2 after that it is showing this error (my_env) PS C:\Users iha> conda env create -n qiime2-amplicon-2024.2 --file qiime2-amplicon-2024.2-py38-linux-conda.yml EnvironmentFileNotFound: 'C:\Users iha\qiime2-amplicon-2024.2-py38-linux-conda.yml' file not found I cannot locatet he yml file, where is it saved by wget? do I need to set some directory?
hi, first of all, thank you for the video and your video has helped me until the step where the command 'conda env create -n qiime2-2022.8 --file qiime2-2022.8-py38-linux-conda.yml'. on my screen it is said that there is conflicts and looking for incompatible packages. Examining conflict was done although it did took more than several minutes. I am still not able to activate qiime2 as the step before it was not successful, any suggestion on how do i go from here?
Hello I followed the tutorial from beginning but I am stuck after installing Anacond. I command for conda list as suggested in video but I received command not found in response.
Thank you, it is so incredible I could very easily install QIIME 2, and using the same I am able to do the tutorials, but I have a query. If I have to work on my metagenomic data, where do I copy the files and how do I access the same in QIIME2 using ubuntu? I tried searching the files I was working during the tutorials, but I was unable to find them in Windows home. Please help me sort this query.
hi, can I ask little help, arrived at step 6, when I type "conda create --env_QIIME2" it returns me "conda: command not found". I am a newby, do you know why? the step 5 was succesfull and I typed "yes" when asked "Do you wish the installer to initialize Anaconda3 by running conda init?". I aso noticed that in your video appear "(base )" before the bash thing, it doesn`t appear to me, but everything else is the same. Any help would be really appreciated
Hello, check whether the conda package is installed properly using "$conda list" command. Also check for the "envs" folder within "Anaconda3" folder. If not your conda has not been initialized. The (base) appears when your conda env is activated.
Hi Bright Geeks, I could not install Qiime. When i copy & paste the 1st instruction from the Native installing Qiime page, I get this message -'wget' is not recognized as an internal or external command,operable program or batch file. How do i proceed?
@Priya Nages. I guess the "wget" function is not installed in your terminal just try to install the wget using this command "sudo apt install wget" and try again.
@@brightgeeks1843 it didn't work. i still get the same message-'wget' is not recognized as an internal or external command,operable program or batch file. i try to uninstall and reinstall-still the same..
I installed wget by closing real time protection, still cannot use the linke to install qiime2, then I downloaded it online and moved to directory, used second command and failed again
Hello everyone, after i install qiime 2022.8. when i run the command: "conda activate qiime2-2022.8", it said that: "QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment." what should I do? Thank you in advance
I have installed "bash Anaconda3-2020.11-Linux-x86_64.sh" and then getting a problem. When I use conda list command, the system said that conda command not found could you help me out. Thanks.
When I use "conda env create -n qiime2-2023.5 --file qiime2-2023.5-py38-linux-conda.yml" it finds a lot of conflicts, loaded for 5+ hours and then I went to activate the new environment and it did not exist. (confirmed with conda info --envs) Advice?
everything is fine upto installing qiime 2, when I entered the first code, it says connection refued, I restarted ubuntu and did it again after activating environment but get the same problem, what to do now?
@ Sadaf Shabbir, just try to run "qiime info" command after activating the qiime environment and see whether all the installed qiime plugins are getting listed. Also mail me your error message so that i can look into it. brightgeeks07@gmail.com.
use this command in the linux terminal "curl -O repo.anaconda.com/archive/Anaconda3-2020.11-Linux-x86_64.sh" and download the software package. Please check the video description for complete details.
After installing Anaconda, when I try to run the command: conda list, it says the conda command was not found. I have tried uninstalling, redownloading Ubuntu and reinstalling Anaconda, but still I get the same error.
This was SO incredibly helpful. THANK YOU! Looking forward to your data analysis tutorial!
Glad it was helpful!
Thank u, it works. i download the qiime2-2024.5 and pretty lookingforward the following analysis!
For those having trouble with anaconda installation, I solved it by replacing the "-o" for upper case "-O" in the curl command.
but I cannot do the next step from Conda list
thank you! :)
Thank you so much, literally you're a life saver!!! If it's useful for anyone, I repeat the same steps on Windows 11 and they worked !
Great to hear!
Hi. Thanks for this video. The instructions were straight forward and easy to follow. Looking forward to other tutorials.
can you help me, please? i cannot create a new unix user after re-installing ubuntu. i could not use ubuntu after i forgot my user password, so i removed and re-installed ubuntu (including anaconda & qiime, i believe). now i cannot even create a new user, and somehow i can log in as a root user. this is very confusing for me as a new user. how can i resolve this problem, please?
Thanks so much for this video! I struggled to install qiime2 until I watched your tutorial. Even though there are still some intuitive steps with a learning curve, I was able to do it! Now I just have to try to install the latest version in a new environment 😅!🙏🏻🙏🏻
after installing the anaconda, conda command not found is showing i even tried the way you have given in the comments below its not working.. furthermore the system is not letting me choose between yes or no it directly chooses no and the conda is not activated
Thank you! This worked when the official method didn't
Wow, great walk through! Thank you!
Hello, I missed typing yes in the 2:26 step, could you let me know how to initialize Anaconda3 again? I tried to use bash Anaconda3-2021.11-Linux-x86_64.sh, but it says the file already exists.
Write your shell name to the "YOUR_SHELL_NAME" part. You can learn your shell name with `echo $SHELL`. In my case, the shell name was "bash".
`eval "$(/home/ocetiner/anaconda3/bin/conda shell.YOUR_SHELL_NAME hook)"`
and you can run the `conda init`command.
@@omerfarukcetiner6473 Thank you!
This was SO incredibly helpful.
Thank you
Extremely helpful, thank you very much
Im trying to install Qiime2 amplicon distribution using anaconda powershell, all steps are running fine till I download QIIME2
after that it is showing this error
(my_env) PS C:\Users
iha> conda env create -n qiime2-amplicon-2024.2 --file qiime2-amplicon-2024.2-py38-linux-conda.yml
EnvironmentFileNotFound: 'C:\Users
iha\qiime2-amplicon-2024.2-py38-linux-conda.yml' file not found
I cannot locatet he yml file, where is it saved by wget? do I need to set some directory?
quick, informative and simple. thanks very much!
Can someone share the link for the shell script? I tried to type it out but I keep geeting curl: no URL specified.
After bash command it says syntax error near unexpected token 'newline'
hi, first of all, thank you for the video and your video has helped me until the step where the command 'conda env create -n qiime2-2022.8 --file qiime2-2022.8-py38-linux-conda.yml'. on my screen it is said that there is conflicts and looking for incompatible packages. Examining conflict was done although it did took more than several minutes. I am still not able to activate qiime2 as the step before it was not successful, any suggestion on how do i go from here?
I think you need to update the version of anaconda you installed with the command "conda update anaconda"
Hi there! I am just wondering did you manage to solve this problem by updating your conda? Because I am also facing the same issue. Thank you
@@yiroubah6962 Yeah it worked for me !
Thank you very much this, really helps
Hello
I followed the tutorial from beginning but I am stuck after installing Anacond. I command for conda list as suggested in video but I received command not found in response.
Try restarting the Ubuntu app or remove the anaconda reinstall it.
Thank you so much. This video made it so easy.
This has been helpful up to Step 7. I was wondering if it's similar if I choose to download QIIME 1?
U can try installing Qiime 1 and let us know if ur able to succeed
Thank you, it is so incredible I could very easily install QIIME 2, and using the same I am able to do the tutorials, but I have a query. If I have to work on my metagenomic data, where do I copy the files and how do I access the same in QIIME2 using ubuntu? I tried searching the files I was working during the tutorials, but I was unable to find them in Windows home. Please help me sort this query.
Will post a video on input data types soon
How do I change the directory to my files? I'm a little unfamiliar with how directories are stored here (/home/jacob14)?
Can you show how to generate metagenomic analysis using qiime 2..thank you...
I'm preparing a video on metagenomic analysis will post it soon
@@brightgeeks1843 thankssss...cant wait...extremely helpful
@@brightgeeks1843 Hi, thanks for the video! Will the video on the metagenomic analysis be coming out anytime soon? Thanks!
@@brightgeeks1843 Thanks a lot!
hi, can I ask little help, arrived at step 6, when I type "conda create --env_QIIME2" it returns me "conda: command not found".
I am a newby, do you know why?
the step 5 was succesfull and I typed "yes" when asked "Do you wish the installer to initialize Anaconda3
by running conda init?".
I aso noticed that in your video appear "(base )" before the bash thing, it doesn`t appear to me, but everything else is the same.
Any help would be really appreciated
Hello, check whether the conda package is installed properly using "$conda list" command. Also check for the "envs" folder within "Anaconda3" folder. If not your conda has not been initialized. The (base) appears when your conda env is activated.
What helped me was the command (after the conda install part): source ~/.bashrc
@@MrGriffinsShorts thanks. I had the same problem and type the above code and it worked.
I had the same problem too, but when I first downloaded anaconda everything went smoothly. Even that "(base)" was displayed.
When I enter the command 'conda env create -n qiime2-2022.2 --file qiime2-2022.2-py38-linux-conda.yml' I get "command not found"
Any advice?
try restarting Ubuntu
How to update exisiting installation, using -u option. What is -u option?
Hi Bright Geeks,
I could not install Qiime. When i copy & paste the 1st instruction from the Native installing Qiime page, I get this message -'wget' is not recognized as an internal or external command,operable program or batch file.
How do i proceed?
@Priya Nages. I guess the "wget" function is not installed in your terminal just try to install the wget using this command "sudo apt install wget" and try again.
@@brightgeeks1843 it didn't work. i still get the same message-'wget' is not recognized as an internal or external command,operable program or batch file.
i try to uninstall and reinstall-still the same..
Mail me the screen shot of your error message.
@@brightgeeks1843 same problem, how did she resolved it
I installed wget by closing real time protection, still cannot use the linke to install qiime2, then I downloaded it online and moved to directory, used second command and failed again
I'm getting this message when I try to create the Anacond environment: "sha256sum: Anaconda3-2020.11-Linux-x86_64.sh: No such file or directory".
Hey, I’m facing the same issue 😞 Have you found a way to solve this ?
try this "bash Anaconda3-2021.11-Linux-x86_64.sh"
Use small "l" instead of L
Did you solve it?
Hello everyone, after i install qiime 2022.8. when i run the command: "conda activate qiime2-2022.8", it said that: "QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment." what should I do? Thank you in advance
I can't download the anaconda package using curl command.... It shows "no URL specified !"
Try this command "curl -O repo.anaconda.com/archive/Anaconda3-2021.11-Linux-x86_64.sh".
The "-O" should be in CAPS.
Thank you so much
@@brightgeeks1843 I am on this part. It is showing strange characters. I don't know if I am doing it correctly
I have installed "bash Anaconda3-2020.11-Linux-x86_64.sh" and then getting a problem. When I use conda list command, the system said that conda command not found could you help me out. Thanks.
run the $"source ~/.bashrc" command and try again.
Iam also facing same problem
i am also facing same problem
When I use "conda env create -n qiime2-2023.5 --file qiime2-2023.5-py38-linux-conda.yml" it finds a lot of conflicts, loaded for 5+ hours and then I went to activate the new environment and it did not exist. (confirmed with conda info --envs) Advice?
same here, could you fix it? tysm
everything is fine upto installing qiime 2, when I entered the first code, it says connection refued, I restarted ubuntu and did it again after activating environment but get the same problem, what to do now?
@ Sadaf Shabbir, just try to run "qiime info" command after activating the qiime environment and see whether all the installed qiime plugins are getting listed. Also mail me your error message so that i can look into it. brightgeeks07@gmail.com.
@@brightgeeks1843 I will send you a mail
Hey can you tell me how to download the anaconda software package?
use this command in the linux terminal
"curl -O repo.anaconda.com/archive/Anaconda3-2020.11-Linux-x86_64.sh" and download the software package.
Please check the video description for complete details.
Hi, do you offer software fixing services? Thanks
Thnx a lot! how do I reopen the environment coming to work next time?
1. Open the command prompt
2. type wsl -d -u
3. Activate the conda environment
4. Run QIIME2
I'm on 2:00 and it is showing weird characters. I don't know if I am doing it correctly
It says
Warning: Failed to create the file Anaconda3-2021.11-Linux-x86_64.sh:
Warning: Permission denied
The issue might be with your internet service provider blocking the download. Try downloading the file manually and proceed with the next step
Till step 5 everything was fine.. but now not able to create conda environment
I can't do step 6, "conda: command is not found"
After installing Anaconda, when I try to run the command: conda list, it says the conda command was not found. I have tried uninstalling, redownloading Ubuntu and reinstalling Anaconda, but still I get the same error.
Hello Jacob ,
did you solve this problem?
@@HuongPham-dp4zp No, I’m afraid not!
After conda installation, run this command:
export PATH=/home/ABC/anaconda3/bin:$PATH
Replace ABC with your PC name
Thank you!
Thank you so much!!!
THX!!!
Hi! I couldn´t inizialize anaconda, minute 2,28 aprox. Thanks in advance!
thank you soooo much!!
You're welcome!