PyMOL | Molecular Visualization System | Basic & Advance Tutorial | Lecture 27 | Dr. Muhammad Naveed
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- เผยแพร่เมื่อ 11 ก.ย. 2024
- PyMOL is an open-source molecular visualization system created by Warren Lyford DeLano. It was commercialized initially by DeLano Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities
About Dr. Muhammad Naveed
Dr. Muhammad Naveed obtained PhD degree in Biotechnology (Genomics & Bioinformatics) from QAU, Islamabad with distinction. He has won PhD indigenous & IRSIP scholarships from HEC. He has done Pre-Doc research at the University of Ghent, Belgium. HEC awarded best PhD (IRSIP) Scholar of the year 2013 & QAU honored him as “Distinguished Alumni” in 2017. He is doing research in Bioinformatics & Molecular Biotechnology. He has supervised 25 MSc., 30 MPhil. & 01 PhDs. He has published 51 research articles, 01 book, and 03 book chapters. He has been awarded distinguished “Researcher of the Years (2016, 2018 & 2019)” by UoG and UCP.
#PyMOL #MolecularVisualization #ProteinInteractions
You are the best teacher.
Bhagwaan apko lambi umra de. 🙏🙏🙏🙏🙏🙏
excellent and easy to understand tutorial.
You are the best sir ,love you from Haryana 🥰🥰
welcome and love you form Pakistan
I follow your videos. You are doing good masha Allah !
welcome dear
WHERE WE CAN DOWNLOAD PROTEIN LIGAND FILE?@@Prof.Dr.MuhammadNaveed
Sir ye pymol livcon use kr skte h na
Ya aise dawa batao upar wale ka wasta aaapko sirr ke masse chale jaye bht preshaan ho dr bht zyadaaa 😢😢😢😢
ASA. Sir do you have the free PyMol. If you have please send the link. I will be thankful to you. I have downloaded but on trial basis.
Way of explanation is excellent
pleasures
Mera accident hogya tha to muzhe 1 mahine tak hospital me hi rahna pada, tb se meko moshanke jaga higher antibiotics ke wajese muzhe achank se bloding aur Mase moshan ke time jalan horha tha to mayne you tube kisi ki comment padke pymol+ livcon capsule and manulax churna magwaya aur 2 mahne continue kiya ab muzhe koi bhi takhalif nhi he,mai ese amazon se mangwata tha •••
not relevant to your disease
Hello Naveed ji nice one but you must have done the result analysis, interacting amino acids, 2D and 3D structure plot and how to design small molecules and peptides from this interaction it could be much more useful really, waiting for ur videos and reply
Regards
ashok
Yes, you are right and mostly covered and rest noted
सर पाइल्स के लिए पाइमोल लीवह कौन का इस्तेमाल कर सकते हैं क्या वह अच्छा रिजल्ट वाली मेडिसिन है, जरूर बताईऐगा
Muzhe bohat jayda Jagran aur kamjori ke karan Piles ki takhalif aur blooding bohat jayda hota tha FIR mayne amezon se pymol+Livcon capsule aur manulax churna magwaliya meri blooding 3din me rukha gya aur Piles ki takhalif bhi khatam hogyi, do maheene me complete aram ho gaya •••
not relevant
Ha ji mayne bhi use kiya pymol+livcon capsule and manulax churna bohat acha result he iska;;:
@@samieermadavi1150 sir plz manulax churna kanha mile ga baii plz batado
I have a question... I am doing class assignment and I have to visualise the mutated protein but I don't know how to visualise it... Can you please guide me sir
just use any visualizer for this regard like jmol pymol
Sir hummare protein main koi ligand ni show ho rha what I will do na koi active sides
sir i am the regular viewer of your video. your all video are very knowledgeable and easy to understand.
I like you to make a video on Gromacs
thank you sir
sure and noted dear
Sir please give the link for ligand
Meko pichale 1 year se piles ki takhailf chalu Hui muzhe kuch samjta nhi tha is bimarike bare me mayne uske taraf jayda kucha gour nhi kiya par moshan ke time blooding aur thoda thoda mass jaysa lagta tha mayne uske tarf jayda dhan nhi diya meri takhalif bohat badte gya aur dard bohat hone laga Mayne amezon pe piles ki dawa sarch Kiya to pymol+Livcon capsule and manulax churna se review dekhake to mangwaake suru kia,muze ye medicine se complete Aram mila, best medicine hai piles ke liye ~~~
its not medicine dear
Ha ji mayne bhi use kiya pymol+livcon capsul and manulax chruna bohat acha result he iska ~~
@@prachigupta624 sachme pymol+livcon capsule and manulax churna bohat acha hai ;;;
@@Prof.Dr.MuhammadNaveed mdcn ni h to kiabh plz btaen am from pakistan from punjab plz tell mjy piles h mene b order krna h plz bta den
ye masse wala piles pymol,livicon,or manulax dwa se ,,,जड़ se khatm hota h kya ,, plzz rply me fast
Hello sir. Can you pls tell while doing protein protein interaction active site prediction. We have to write 5 amestrong??? Or it was just for protein ligand active site
for all
Screen pr top right pr or neechy jo bar a rha ha apka wo irritating ha. Kindly usko hata den full screen show ho to behter ha.
try to maximize screen
Sir full screen pr b ata ha
Meko pichale 1 year se piles ki takhailf chalu Hui muzhe kuch samjta nhi tha is bimarike bare me mayne uske taraf jayda kucha gour nhi kiya par moshan ke time blooding aur thoda thoda mass jaysa lagta tha mayne uske tarf jayda dhan nhi diya meri takhalif bohat badte gya aur dard bohat hone laga Mayne amezon pe piles ki dawa sarch Kiya to pymol+Livcon capsule and manulax churna se review dekhake to mangwaake suru kia,muze ye medicine se complete Aram mila, best medicine hai piles ke liye """"
@@yashmishra6823 ha ji mayne bhi use kiya pymol+livcon capsul and manulax chruna bohat acha result he iska ××÷
@@prachigupta624 sachme pymol+livcon capsule and manulax churna bohat acha result he iska ;::
Sir plzz mutagensis kesy kr skty h by using pymol
Fishar k liye kaisa h sir mujhe takleef h boht
Excellent
Glad to hear that its help you
Greetings sir.
In the sequence selection, which one I need to select ? Do I have to select the last one ?
your ligand yes at last
very good explaination sir. Kindly also explain how to calculate RMSD in Pymol?
Noted and sure will do in coming lectures
Sir I have a question, why from pdb website proteins are not downlaod in pdf formate
Sir, Where can I find the type of bonding among interacted residues while protein-ligand interaction analysis in PyMOL?
atomic interactions in form of angstrom values
Good lecture sir
welcome
Love from 🇮🇳
Pleasures and welcome dear
Nice job
Pleasures and welcome dear
sir kindly tell me which protein-ligand interaction explain here???
Acetylcholine and its receptor protein
Sir sequence enter Krny se wo ni AA Ra...any solution?
upload solution or complex file rather than a sequence
Meko pichale 1 year se piles ki takhailf chalu Hui muzhe kuch samjta nhi tha is bimarike bare me mayne uske taraf jayda kucha gour nhi kiya par moshan ke time blooding aur thoda thoda mass jaysa lagta tha mayne uske tarf jayda dhan nhi diya meri takhalif bohat badte gya aur dard bohat hone laga Mayne amezon pe piles ki dawa sarch Kiya to pymol+Livcon capsule and manulax churna se review dekhake to mangwaake suru kia,muze ye medicine se complete Aram mila, best medicine hai piles ke liye ;;;;
@@yashmishra6823 ha ji mayne bhi use kiya pymol+livcon capsule and manulax churna bohat acha result he iska ;;;
Fistula ki problem pe kiya pymol + livcon manulax churna results accha deta ha kiya ...please tell me .... Mera bhut problem ho raha ha
not relevant
Sir piles ke liye kya treatment sir
THANK YOU SIR
Most welcome
Great explanation.
welcome dear
hi...brother can we find the dimensions of enzyme using enzyme structure???
yes you can
Can you please guide me how?
Usong pymol
I want to find the size of enzyme and active site using pymol, but i didn't found any video related to it..
It is a humble request if you can guide me this or help me in this regard
Sir pilonidal since me bhi le sakte h kya
??
Wanna ask you something
yes
A.o.a sir
waslam
Use kaise karte hai
watch lecture
Ye dawa hm kha sakte h sir babasir me hmesa ke liye sahi ho jayega
not relevant
सर मुझे मस्से की प्रोवलम है, बहुत परेशान हूं, कृप्या इलाज बताएं🙏🙏😔😔
13:43 I love that. Do you love me? 😍💋 💝💖❤️