Thank you so much for this video! I was wondering is it possible to run animations on PyMOL, or should I integrate it with Blender or another 3D modeling program? I’d love to demonstrate some protein interactions for a club that I run at my Highschool!
Hi Sir, thank you for the introduction. The undo and redo is not working. Is there any other option to return to the previous structure? It is very difficult to close the whole program and reopen it every time I do a mistake
Thanks for the video! I wonder if you can help 🙏🏽, I am trying create crystallographic model BBI proteing from Vigna unguiculata (accession 2r33 in PDB) in order to visualize structural modifications caused by the aminoacidic differences between the analysed Vigna unguiculata accessions we are analysing. there 5 possible forms but we had proplems with 2 because their mutations are in the propeptide zone. my colleague said that there are few Vigna unguiculata BBIs in the database and in most cases they include a BBI + molecular target (like trypsin and chymotrypsin)
Sir could u pls tell me how we can presented our ball and stick structure or how we can analyze that their are ionic or covalent or which type of bonds are present
If I have a protien drug complex for example "Human Transthyretin complex with diclofenac" how I am supposed to find protein part and drug part? Could you please help me out with it??
Waht a great video...sir please make video on docking and simulations .please it would be a great help.
Soon... Thank U
@@jaannawaz2007 stfong
Very concise and informative. Excellent work. Thank you so much!
Found the best video after searching for days. Absolute basics! Loved it!
Thank you.
Woww... Thank you so much sir.... This video is the best stepping stone for using pymol
Thanks for the video.
Thanks for making this video! Very helpful overview!
Great video. Thank you a lot
Thank you so much for this video! I was wondering is it possible to run animations on PyMOL, or should I integrate it with Blender or another 3D modeling program? I’d love to demonstrate some protein interactions for a club that I run at my Highschool!
beautifully done
Please tell me the name of your protein in the video. I want to recreate that
Hi Sir, thank you for the introduction. The undo and redo is not working. Is there any other option to return to the previous structure? It is very difficult to close the whole program and reopen it every time I do a mistake
I have heard it is better to use APBS plug in rather than vacuum electrostatics can anyone tell me why?
SIR is it mandatory to register ?
Thanks for the video!
I wonder if you can help 🙏🏽, I am trying create crystallographic model BBI proteing from Vigna unguiculata (accession 2r33 in PDB) in order to visualize structural modifications caused by the aminoacidic differences between the analysed Vigna unguiculata accessions we are analysing. there 5 possible forms but we had proplems with 2 because their mutations are in the propeptide zone. my colleague said that there are few Vigna unguiculata BBIs in the database and in most cases they include a BBI + molecular target (like trypsin and chymotrypsin)
Thank you
Could you please eliminate that annoying background music next time. Otherwise nice video.
Sorry, for inconvenience... Yes, we removed background music for all other videos ...
What to do if my target and Ligand are far apart when I open them in pymol? As in Ligand is not in active site of target, but separate
Thanks 👍
Thanks
Sir could u pls tell me how we can presented our ball and stick structure or how we can analyze that their are ionic or covalent or which type of bonds are present
Thank You Sir. It was very informative.
You are most welcome
If I have a protien drug complex for example "Human Transthyretin complex with diclofenac" how I am supposed to find protein part and drug part? Could you please help me out with it??
May in be next few weeks I am going to release advanced pymol session... U get above information in that video
great
How to see Cryo and x ray crystallography structure in pymol
How can we save high resolution images?
I already mentioned in the video.. if u have any errors u can post ur concerns in our Facebook page
facebook.com/groups/261045198486665/
Hi i want to ask how i can extract the proteins contact map for a given protein pdb file
you have to different toosl to get contact maps such as zhanglab.ccmb.med.umich.edu/NeBcon/
Whitney Ridge
Hi can you tell how to mutant amino acid by formylglycine and further it's conversation to gem-Diol.
And software used for it
Your question is not clear..
Sir i have doing molecular docking but problem in pdb file..
@@jaannawaz2007 in article the amino acid present and position 50 is mutant to formylglycine and then is convert to gem- diol
I do not no how it mutant to formylglycine and next step . I am simply mutant to glycine but not convert to formylglycine and next step..
Please make a vedio on publication images using ppt
You mean powerpoint?
Cary Circle
How do I calculate docking score , docking energy n h-bonds
Check my videos in TH-cam Channel page
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I don't undenstand it's free or not?
Free Academic for limited time
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Bro the music on the background is super annoying!
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There's no need of a background music in the video. Its just an unnecessary strain to ears and mind.
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