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Casual Chemistry
United Kingdom
เข้าร่วมเมื่อ 3 เม.ย. 2021
Laid-back discussion of ideas in Chemistry, mainly organic.
About me: I have both an undergraduate degree and a PhD in Chemistry from the University of Cambridge, and experimenting with TH-cam to add something new to my tutoring experience.
Favourite topics include: retrosynthesis, retrosynthetic analysis, the disconnection approach, organic chemistry mechanisms, curly arrow mechanisms.
Also quite a fan of physical chemistry and theoretical chemistry, particularly where they have applications in organic chemistry. And of course I love inorganic chemistry, particularly when molecular orbitals get involved. I hope I can make some useful content on these topics too for those studying chemistry, and also those who might be new to these topics to see how you can push them at a university level of detail.
#chemistry #education #stem #organicchemistry #orgo #ochem #science
About me: I have both an undergraduate degree and a PhD in Chemistry from the University of Cambridge, and experimenting with TH-cam to add something new to my tutoring experience.
Favourite topics include: retrosynthesis, retrosynthetic analysis, the disconnection approach, organic chemistry mechanisms, curly arrow mechanisms.
Also quite a fan of physical chemistry and theoretical chemistry, particularly where they have applications in organic chemistry. And of course I love inorganic chemistry, particularly when molecular orbitals get involved. I hope I can make some useful content on these topics too for those studying chemistry, and also those who might be new to these topics to see how you can push them at a university level of detail.
#chemistry #education #stem #organicchemistry #orgo #ochem #science
Solving Anti Aldol Reaction Issues
Using lactic acid derived auxiliary chemistry to perform highly diastereoselective anti aldol reactions (lactate aldols). A full explanation evolving a Zimmerman-Traxler Transition State into a chelated boat-like transition state where the configuration of an alpha (prime) stereocentre on the boron enolate can induce stereochemical control on the product. The reaction relies on a stabilising, non-classical hydrogen bond with the formyl hydrogen atom of the activated carbonyl group.
Links to other videos referenced
---------------------------------------------------
Introduction Part 1:
th-cam.com/video/XZ30Fup3xyA/w-d-xo.html
Introduction Part 2:
th-cam.com/video/qFe5T7WLHDY/w-d-xo.html
Felkin-Anh Model:
th-cam.com/video/JvF5NQ54-z4/w-d-xo.html
A simple boron-mediated aldol reaction:
th-cam.com/video/b9KWPWeVkZg/w-d-xo.html
A retrosynthesis using auxiliary chemistry
th-cam.com/video/zlclJzdrtBI/w-d-xo.html
References from video
------------------------------------
Studies on Lactate Aldol Reactions:
Tetrahedron Lett. 1994, 35, 9083-9086
doi.org/10.1016/0040-4039(94)88434-X
Tetrahedron Lett. 1994, 35, 48, 9087-9090
doi.org/10.1016/0040-4039(94)88435-8
J. Org. Chem. 1992, 57, 19, 5173-5177
doi.org/10.1021/jo00045a033
Links to other videos referenced
---------------------------------------------------
Introduction Part 1:
th-cam.com/video/XZ30Fup3xyA/w-d-xo.html
Introduction Part 2:
th-cam.com/video/qFe5T7WLHDY/w-d-xo.html
Felkin-Anh Model:
th-cam.com/video/JvF5NQ54-z4/w-d-xo.html
A simple boron-mediated aldol reaction:
th-cam.com/video/b9KWPWeVkZg/w-d-xo.html
A retrosynthesis using auxiliary chemistry
th-cam.com/video/zlclJzdrtBI/w-d-xo.html
References from video
------------------------------------
Studies on Lactate Aldol Reactions:
Tetrahedron Lett. 1994, 35, 9083-9086
doi.org/10.1016/0040-4039(94)88434-X
Tetrahedron Lett. 1994, 35, 48, 9087-9090
doi.org/10.1016/0040-4039(94)88435-8
J. Org. Chem. 1992, 57, 19, 5173-5177
doi.org/10.1021/jo00045a033
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Weird looking H you got there
Can you please make vedio on retrosynthesis of aceclofenac and diclofenac
I’ll have a think about them but I usually focus on an underlying teaching topic rather than a specific molecule. On a glance it looks like Buchwald-Hartwig couplings would be useful for these.
Very helpful thank you so much 🙏🏻
🙂 You’re welcome - glad you enjoyed
Hello. Cool video cheers. I think is worth pointing out that the methyl and benzyl ether shouldn't be considered 'pretty similar' in size. The benzyl ether is much larger, and while it is more flexible and could adopt conformations to minimise steric hindrance, the methyl group would have a much smaller impact on sterics. Only mentioning this in case people get the wrong idea :)
Thanks 🙂 yes - agreed in hindsight I should’ve at least said locally statically similar or something. I will bear this in mind for future videos
Great, I've been looking forward to this one. Thank you for all your efforts in making these.
🙂 Thanks. A fiddly one to work out what I wanted to do with this topic.
Perez Mark Clark Anthony Robinson Scott
OMG Finally You Are Here Agaaaaaaain, hows ur day gooooooing?
🙂 Got more time back to pick up where I left off finally
One of my favorite chemistry content creators is back!
🙂 Thanks. Am glad to have the time again to make more content
Welcome back! Hope your channel grows since very few people teach graduate level organic chemistry on YT
🙂 Thanks. It’s an area I’m hoping I can expand into for sure and hopefully spark some curiosity beyond the usual topics
didnt expect to recieve a notif, nice to see you back bro
🥳 Thanks. Too many work deadlines this year - feels good to be back and play with making these videos
Great video! I learnt a lot from this.
Thanks 🙂 glad it was helpful
Is it just me or someone else sees it the same? Should not have the product be the opposite enantiomer? 🤔
I think it’s correct. Note the it’s flipped over from the example in this paper with the aldehyde in the product on the right rather than the left - a rotation not a mirror image. macmillan.princeton.edu/wp-content/uploads/aldehyde-aldol.pdf
@@CasualChemistry oh, now I see that! Thank you🫶🏻
Need ribose
Very nice explanation. I have one question, if you are taking R group as a iPr, then enolisation occur from other side because, NEt3 is not that much strong and bulky base.
The main idea is there has to be a difference between the two sides of the carbonyl do differentiate between. The NEt3 is bulky enough but not too bulky to be able to get the H off the ethyl group but not the isopropyl group just on sterics. This is the dominant thing going on. I’m going to touch on this in my next video: another factor is the isopropyl group’s bulk favours the boron Lewis acid sitting on the ethyl group side. There’s also a Stereoelectronic effect that helps make the ethyl group’s protons a bit more acidic. These reactions are done at low temperatures when you need to be careful to select so small differences in activation energies are enough to get selectivity.
The additional info on stereochemistry is helpful. Nice series, thanks!
You’re welcome 🙂
the "magically functionalise an alcohol from an sp3 carbon anywhere" reaction hydrogenation still better imo
It has its place this one, though I’ll admit I’ve only ever done one of these and it was out of desperation. If going via an alkene and hydrogenation, there will be a problem if there’s an alpha stereocentre that you want to keep pure.
Chemiolis used something similar to make truffle flavor!
Sulfur chemistry gets everywhere (!) 🙂
When possible, could you please put side products? Maybe like a "-MeOH" or something? It's helpful in thinking through the rxn
Sure - I’ll try and remember in future. It’s not so conventional with this sort of system but I get your point.
❤❤
Very well explained.
Thanks 🙂
Thank you for your explanation. I understand better now.
I never understood why H- is a leaving group in this reaction. Isn’t H- one of the highest pKa?
Not really so high - the pKa of H2 is about 35, and you can go up to 50 with alkanes. H- has its 2 electrons in a quite low energy 1s orbital with a decent effective nuclear charge. NH3 is about 33. So the hydride and the sodamide anions are similar stability. Probably some reversibility in this specific reaction but then the final deprotonation is definitely irreversible and pushes the equilibrium to the product as the H2 gas released goes into the surroundings. I’ve heard people say the Na+ cation helps, but I don’t buy it.
Maybe a little late for the party, but I got a question regarding the Beckmann rearrangement step: Aren't these the exact conditions you would choose for a Neber rearrangement (tosylated oxime + base)? How would I control the outcome (lactam vs. alpha-amino ketone)?
The Neber reaction needs a stronger base to form an anion stepwise and also the specific oxime C=N geometry locked in (eg TsO away from a big R group). To be honest I don’t think you see the Neber reaction very often even if you form the oxime anion as the mechanism has a high activation energy. There are other pathways likely to compete with it, such as other types of nucleophilic attack. The Beckmann doesn’t require the anion formation
(Sorry for the slow reply - I’ve been doing my dissertation. Back on the videos now 🙂)
For the 1,4 cyclohexadiene, why didnt you do a DA with butadiene and ethyne? You said birch rxn cond. Is harsh, DA's arent as harsh
Well harsh as in not tolerant of many functional groups but there isn’t much going on in this molecule so should be fine. The DielsAlder with butadiene is problematic as the dienophile does not have an electron withdrawing group attached. So both needs a higher temp than usual, but worse there’s no way to stop the butadiene reacting further with the product alkenes, and then further again into a mixture. There’s also a risk that the specific alkyne starting material here would isomerise, and also the product into conjugation.
@@CasualChemistry ahhh I see, yo so how did you get into this? I'm in undergrad still and I want to work in org synthesis, any tips?
Hello, I have a question at 3:18 , how do you visualise and draw the bonds the way you do? I try so hard to do it and i cant understand which bond should be a wedged bond or a hashed bond. Another example is 7:50. Do you have any advice?
Sorry for slow reply - I was busy finishing my dissertation. Back on to the videos now 🙂 I’m afraid there’s not an easy answer here other than a lot of practice on my part. I find it easiest to try and get as much of the molecule as possible in the plane of the paper - and definitely keep all the reaction arrows in the plane too else the 3D gets messy. Playing with a tetrahedron model can be a good idea too so you can visualise that important shape in several ways. Eg both like a pyramid but also like a triangle with a pointy out bit from one perspective. And from another perspective like two lines joining two atoms, one behind the other, at right angles.
Could you bring up more such videos on natural product molecules
Will do - they’re in my plan. I’m back on the video making now as my dissertation is finished 🙂
So similar to acyloine condensation...
planning a medchem viva soon, anyone know any good resources for example questions for retrosyntheses (+ w answers ina ddiiton to these amazing videos ;)) many thanks!!!
Hi. So sorry for the slow reply - I caught caught up finishing my dissertation. Well one of my main reasons for making these videos is because of a lack of resources on this. The Baran med chem lecture notes on his website are pretty good for this sort of thing
@@CasualChemistry oh yes Baran is great. Good luck with the dissertation! I’m also writing and it is a big weight! Thanks ☺️
Really enjoyed seeing you explain the Woodward Hoffman rules and demonstrate how to use them, didn't really understand how to use them especially the suprafacial and antarafacial parts until I saw this video :D What are some tips on getting good at organic chemistry mechanisms? I want to try deepen my understanding of organic chemistry and your videos have been helping to motivate me to study as they highlight how interesting the subject is.
Thanks 🙂 If I’m totally honest, practice is by far the most effective way of getting good and try not to just memorise things. It’s more like learning maths I reckon - focus on methods and patterns between reactions. If you haven’t done so already, a solid understanding of qualitative molecular orbital theory is a really good way to unpack problems logically
bros got great taste in music too
Thank you for providing such a well-visualised explanation!!
🙂 Thanks
Fisher's method requires phenylhydrazine, carbonyl compound and acidic catalyst, doesn't it?
Yep - that’s what’s in the mechanism
Wouldn't the acid chloride react with the NH2 on the benzioxazole?
Yes - so the order of steps needs to be considered carefully. Use of the nitrile avoids this issue in the forward synthesis
bro your chair conformations are so nice looking! mine look like garbage every time I try to draw one...
😊 Thanks. They’re from a lot of practice though
4,4-dimethoxy-N,N-dimethylbutan-1-amine + phenylhydrazine = ?
That’s the idea, yes
Thank you so much for the video
:) Glad it was helpful
I'm a bachelor student,my teacher said if sp3 hybridized more nucleophilic relative to sp2, but here epoxide is sp3 and carbonyl is sp2 ,why the proton approaches to sp2 instead of high nucleophilic sp3 center (epoxide) during acid catalyst
That’s true but that just means that can happen faster. Here everything is reversible, and only when the epoxide can anything happen. When it does fragment, it can’t go backwards either then
@@CasualChemistry he said that,he had given some rules ,including this rule,if all these rules were not followed in exams he would not give marks.
I’m afraid that sound like a teacher who might not know the subject so well. Also, the epoxide is a strained system - the epoxide lone pairs are not pure sp3 anyway
when cyclicization happens, product forms a cycle right,when this happen ,i mean to which extend.if 8 member cycle is present,is it possible instead of benzene
If you mean 8 membered ring for the delocalised part replacing benzene, that probably won’t work. That ring would be anti aromatic and not planar. If you mean 8 membered ring on the right hand side, it would be much trickier to form as the angles do not work well for cyclising like that. You might just form a dimer with another molecule instead.
@@CasualChemistry to which extent,it works
I don’t think the 8 membered ring would work very well
I have a doubt,why nh2 group intially attacks instead of oxygen which has lone pair, DOES IT BECAUSE OF ELECTRONEGATIVIGY OF N AND OXYGEN,if not tell what is the reason
At the start it’s just reversible up until the water is removed by the drying agent. Also, the nitrogen line pair is higher energy than the oxygen as it’s a less electronegative atom (lower effective nuclear charge)
@@CasualChemistry thank you
This is how I look organic chemistry.
Very well explained starting from A with well clarity leading to Z! Awesome!
Thanks 🙂
i think acidic medium will inc the rate of the reaction as it will increase the electrophilicity of the alpha carbon
Sure- there are other ways of getting the same product, but usually via fully pre-functionalising the pyridine at the nitrogen. Common methods included making the pyridinium cation by tosylation, or using a O-substituted pyridine N-oxide
Hi! How are you? I really like your videos, they are really helpful because I'm taking this course right now. I have a question, at the second to last step when you hydrolyze the enamine, wouldn't you hydrolyze the ester as well? Wouldn't be better to use an acid halide? I'll wait for your response, thank you so much!
Glad they’re helpful 🙂 I realised that there wasn’t much useful stuff out there freely available on these topics. There’s a big reactivity window so should be find. Using dilute (mild) acid with the enamine hydrolysis at room temperature. The N is much more basic than an O lone pair, and the C=N pi bond is less strong than a carbonyl bond. The ester hydrolysis would require a more aggressive set of conditions and probably at high temperature.
@@CasualChemistry thank you so much!
it is just like fittig reaction done by Na in dry ether
Hmm - well more of a Wurtz coupling. But you’d struggle to get just cross-coupling of two different aromatics that way if you want a generalisable reaction.
Outstanding
Excellent demonstration with a blend of both theoretical and experimental aspects on the topic!
Glad you enjoyed the video! It was very deliberately to present this topic more coherently than you normally see in textbooks etc
True and that's what depicted in the content!@@CasualChemistry
me, a high school student, watching this: :0
🙂 Spoilers for quite a way after high school
Great work! Am new to your channel and trying to learn retro synthesis
🙂 Thanks. I’ve been working to trying to cover some range with my retrosynthesis videos as there weren’t many similar resources out there - hopefully you can find a useful mixture of intro to advanced level videos
Nice video!! It really helped me a lot.
😎 You’re welcome - glad it was useful
Great video, I just have a question, at minute 9:49 we have created etoxide along with the six members ring, wouldn`t the etoxide take one of the protons in between the two carbonyls? and if that is the case could we solve it by adding enough acid to compensate for the etoxide, before doing the saponification? thank you for your videos
Yes - that’s exactly correct. The video hasn’t included the work up procedure involving acid as it’s not so conventional to do so. The choice of ethoxide throughout is also to ensure an equilibrium too, but I agree that product will be largely deprotonated until acid work up.
@@CasualChemistry I understand, if the product will be deprotonate until we add the acid at the end and we have the reaction between the ester and the OH- before that wouldn't be hard that the OH- attacks an already negatively charged molecule, I hope this makes sense, I am asking because we did the exact steps you outlined and we got a very yellowish-orange solution, I still don't have the yield but I was thinking that maybe we got side reactions because the product is described as white and i thought that maybe by neutralising the solution before adding the OH- could limit the side reactions. I have also considered that maybe I am over complicating it and it's just impurities from the reagents most likely the α,β unsaturated ketone. I would be curious to hear your opinion.
So it’s a very long time ago since I did something close to this but one thing I would say is with this sort of chemistry (and enolates almost in general) yellow/orange solutions are quite common. A small amount of impurity colour goes a very long way - probably something involving a conjugated system here such as a small amount of an enol tautomer. As in you still have the product but some fraction of it is sitting in a very coloured isomeric form - almost certainly cleanable by flushing through a plug of silica (best case) or by column chromatography, or with dimedone specifically, try a recrystallisation. There will inevitably be some by products to with this largely mix and heat sort of process too - different enolates can form in lesser extents through out, eg deprotonating the alpha beta unsaturated ketone and it doing a different aldol. But I think my gut instinct without any further data is to stick with it - you’ve probably got the right thing in good yield even if yellow - you probably need another purification step.
@@CasualChemistry Thank you very much! That makes a lot of sense. I will do that :)