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Brown Lab
เข้าร่วมเมื่อ 30 ส.ค. 2017
ChimeraX Tutorial: Structural Analysis and Alignments | Brown Lab
This video is brought to you by the Brown Lab at Virginia Tech. In this tutorial we will go over how to align proteins and structural analysis.
ChimeraX Download: www.cgl.ucsf.edu/chimerax/dow...
Brown Lab Website: bevanbrownlab.com/
Music by DivKid - Rich in the 80s : th-cam.com/video/Ii5zHb6KZT0/w-d-xo.html
0:00 Intro
ChimeraX Download: www.cgl.ucsf.edu/chimerax/dow...
Brown Lab Website: bevanbrownlab.com/
Music by DivKid - Rich in the 80s : th-cam.com/video/Ii5zHb6KZT0/w-d-xo.html
0:00 Intro
มุมมอง: 1 017
วีดีโอ
ChimeraX Tutorial: Making a Holiday Tree | Brown Lab
มุมมอง 1.9Kปีที่แล้ว
This video is brought to you by the Brown Lab at Virginia Tech. Inspiration From: pdbeurope/status/944231363141689344 michelanglo.sgc.ox.ac.uk/r/christmas ChimeraX Download: www.cgl.ucsf.edu/chimerax/download.html Brown Lab Website: bevanbrownlab.com/ Music by DivKid - Rich in the 80s : th-cam.com/video/Ii5zHb6KZT0/w-d-xo.html 0:00 Intro 0:25 Inspiration 0:35 Making the Tree Trunk 1...
ChimeraX Tutorial: Movie Making Tips | Brown Lab
มุมมอง 3.6Kปีที่แล้ว
This video is brought to you by the Brown Lab at Virginia Tech. Previous Tutorial: th-cam.com/video/ZtOwsH5ohlM/w-d-xo.html ChimeraX Download: www.cgl.ucsf.edu/chimerax/download.html Written Version: docs.google.com/document/d/1VX1KP2iyDuUjCErBzzHFhayePlZsgBUs/edit?usp=share_link&ouid=101052807458285977815&rtpof=true&sd=true Brown Lab Website: bevanbrownlab.com/ Music by DivKid - Rich in the 80...
ChimeraX Tutorial: Custom Movies Using Commands | Brown Lab
มุมมอง 8Kปีที่แล้ว
This video is brought to you by the Brown Lab at Virginia Tech. ChimeraX Download: www.cgl.ucsf.edu/chimerax/download.html Written Version: docs.google.com/document/d/1VX1KP2iyDuUjCErBzzHFhayePlZsgBUs/edit?usp=share_link&ouid=101052807458285977815&rtpof=true&sd=true Brown Lab Website: bevanbrownlab.com/ Music by DivKid - Rich in the 80s : th-cam.com/video/Ii5zHb6KZT0/w-d-xo.html 0:00 Intro 0:30...
ChimeraX Tutorial: Movie Making Basics | Brown Lab
มุมมอง 7Kปีที่แล้ว
This video is brought to you by the Brown Lab at Virginia Tech. In this Tutorial we will go over the basics of making movies in ChimeraX. ChimeraX Download: www.cgl.ucsf.edu/chimerax/download.html Written Version: docs.google.com/document/d/1VX1KP2iyDuUjCErBzzHFhayePlZsgBUs/edit?usp=share_link&ouid=101052807458285977815&rtpof=true&sd=true Brown Lab Website: bevanbrownlab.com/ Music by DivKid - ...
ChimeraX Tutorial: User Interface Options and Tools | Brown Lab
มุมมอง 11Kปีที่แล้ว
This video is brought to you by the Brown Lab at Virginia Tech. In this tutorial we will go over the user interface and look at some of the tools and options. ChimeraX Download: www.cgl.ucsf.edu/chimerax/download.html Written Version: docs.google.com/document/d/1VX1KP2iyDuUjCErBzzHFhayePlZsgBUs/edit?usp=share_link&ouid=101052807458285977815&rtpof=true&sd=true Brown Lab Website: bevanbrownlab.co...
ChimeraX Tutorial: Download/Installation & User Interface Layout | Brown Lab
มุมมอง 10Kปีที่แล้ว
This video is brought to you by the Brown Lab at Virginia Tech. In this tutorial we will go over how to download & install ChimeraX and breakdown the user interface. ChimeraX Download: www.cgl.ucsf.edu/chimerax/download.html Written Version: docs.google.com/document/d/1VX1KP2iyDuUjCErBzzHFhayePlZsgBUs/edit?usp=share_link&ouid=101052807458285977815&rtpof=true&sd=true Brown Lab Website: bevanbrow...
ChimeraX Tutorial: Using the command-line to create visualizations | Brown Lab
มุมมอง 10Kปีที่แล้ว
This video is brought to you by the Brown Lab at Virginia Tech. In this tutorial we will go over how to use the command line to create high quality visualizations. ChimeraX Download: www.cgl.ucsf.edu/chimerax/download.html Written Version: docs.google.com/document/d/1VX1KP2iyDuUjCErBzzHFhayePlZsgBUs/edit?usp=share_link&ouid=101052807458285977815&rtpof=true&sd=true Brown Lab Website: bevanbrownl...
2021-11-23 ds4biomed: Tidy Data w/ Exercises
มุมมอง 592 ปีที่แล้ว
R Workshop on Tidy Data principles using short exercises during the class (formative assessments) along with a "final" summative assessment question at the very end. Materials: ds4biomed.tech/
2021-11-18 ds4biomed: Tidy Data w/ Exercises
มุมมอง 702 ปีที่แล้ว
R Workshop on Tidy Data principles using short exercises during the class (formative assessments) along with a "final" summative assessment question at the very end. Materials: ds4biomed.tech/
ds4biomed: More Data Processing and Introduction to Modeling in R Day 2
มุมมอง 872 ปีที่แล้ว
R Workshop Part II Day 2: More Data Processing and Introduction to Modeling in R Materials: ds4biomed.tech/ 0:00 - Join follow up date arithmetic 16:10 - leading causes of death, adjusted rates, Census API call 1:14:34 - Survival models (forgot to change the scene in the beginning) 1:53:34 - Audience Question 2:00:13 - Machine Learning Intro 2:58:53 - Conclusion
ds4biomed: More Data Processing and Introduction to Modeling in R Day 1
มุมมอง 682 ปีที่แล้ว
R Workshop Part II Day 1: More Data Processing and Introduction to Modeling in R Materials: ds4biomed.tech/ 0:00 - 30-Day Readmission 1:07:08 - Joins 1:30:34 - Databases 1:54:56 - Functions 2:42:43 - Get Census API key
ds4biomed: Introduction to Data Science Fundamentals in Python with Biomedical Applications Day 2
มุมมอง 862 ปีที่แล้ว
Python Workshop Day 2: Introduction to Data Science Fundamentals in Python with Biomedical Applications (ds4biomed) workshop on September 22-23 from 2PM - 5PM (EDT). Materials: ds4biomed.tech/ Code from class: github.com/chendaniely/2021-09-22_23-ds4biomed-py 0:00 - Intro Recap Review 20:45 - Tidy data 1:19:25 - Plotting seaborn 2:05:21 - Logistic regression statsmodels scikitlearn 2:52:28 - Cl...
ds4biomed: Introduction to Data Science Fundamentals in Python with Biomedical Applications Day 1
มุมมอง 2052 ปีที่แล้ว
Python Workshop Day 1: Introduction to Data Science Fundamentals in Python with Biomedical Applications (ds4biomed) workshop on September 22-23 from 2PM - 5PM (EDT). Materials: ds4biomed.tech/ Code from class: github.com/chendaniely/2021-09-22_23-ds4biomed-py 0:00 - Intro 16:52 - Spreadsheets 43:51 - Python JupyterLab 47:50 - Working directories Load data 1:09:02 - Subsetting data Data Pipeline...
ds4biomed: Introduction to Data Science Fundamentals in R with Biomedical Applications Day 2
มุมมอง 872 ปีที่แล้ว
ds4biomed: Introduction to Data Science Fundamentals in R with Biomedical Applications Day 2
ds4biomed: Introduction to Data Science Fundamentals in R with Biomedical Applications Day 1
มุมมอง 1112 ปีที่แล้ว
ds4biomed: Introduction to Data Science Fundamentals in R with Biomedical Applications Day 1
ds4biomed Workshop May 18 & 19, 2021 UVA Part 1
มุมมอง 473 ปีที่แล้ว
ds4biomed Workshop May 18 & 19, 2021 UVA Part 1
ds4biomed Workshop May 18 & 19, 2021 UVA Part 2
มุมมอง 613 ปีที่แล้ว
ds4biomed Workshop May 18 & 19, 2021 UVA Part 2
ds4biomed Workshop February 2 & 4, 2021 Part 2
มุมมอง 603 ปีที่แล้ว
ds4biomed Workshop February 2 & 4, 2021 Part 2
ds4biomed Workshop February 2 & 4, 2021 Part 1
มุมมอง 1133 ปีที่แล้ว
ds4biomed Workshop February 2 & 4, 2021 Part 1
ds4biomed Business of Healthcare Workshop 2020-12-09
มุมมอง 253 ปีที่แล้ว
ds4biomed Business of Healthcare Workshop 2020-12-09
ds4biomed Workshop October 20 & 22, 2020 Part 2
มุมมอง 763 ปีที่แล้ว
ds4biomed Workshop October 20 & 22, 2020 Part 2
ds4biomed Workshop October 20 & 22, 2020 Part 1
มุมมอง 3173 ปีที่แล้ว
ds4biomed Workshop October 20 & 22, 2020 Part 1
Molecular Modeling Using PyMOL: 3 Guide to Good Visualizations | Brown Lab
มุมมอง 10K4 ปีที่แล้ว
Molecular Modeling Using PyMOL: 3 Guide to Good Visualizations | Brown Lab
Molecular Modeling Using PyMOL: 2 Measurements and Labeling | Brown Lab
มุมมอง 16K5 ปีที่แล้ว
Molecular Modeling Using PyMOL: 2 Measurements and Labeling | Brown Lab
Molecular Visualization Using PyMOL: 1 Introduction/User Interface | Brown Lab
มุมมอง 33K5 ปีที่แล้ว
Molecular Visualization Using PyMOL: 1 Introduction/User Interface | Brown Lab
How to Install Molecular Docking Software for Windows | Brown Lab
มุมมอง 10K5 ปีที่แล้ว
How to Install Molecular Docking Software for Windows | Brown Lab
How to Install Molecular Docking Software for Mac | Brown Lab
มุมมอง 25K5 ปีที่แล้ว
How to Install Molecular Docking Software for Mac | Brown Lab
thanks for the video! question: it takes my computer more than an hour to create the morph, does it suppose to take so long?
How do you make it more shiny?
Great tutorial! would U pls share the Commands used in this video in a file?
great video, thanks! How to add scale bar for a 3D protein structure, given that I don't know the size of the protein in angstrom or nanometers?
Very thorough, very useful! Thank you very much for the tutorial.
The hide comment you mention is working for the atomic model only but not the ribbons. Is there a way to do the same for the ribbon model?
I found my answer! The command will be "cartoon hide" in place of "hide". But great tutorial, thanks!
Very clear and easy to understand
Great Video. I am just a beginner. Please help me how to get back the Toolbar across the top of the ChimeraX window that contains icons for performing actions with a single click, including home, molecular display, nucleotide, graphics, etc.
I've always wanted to make these kinds of videos since I saw myosin walking 😂 this was soo helpful!
Very explicit video. Thank you. I tried to download the MGLtools (mgltools_i86Darwin9_1.5.6.dmg (GUI installer 65Mb)) for my Mac along with XQuartz 2.7.11. I am running the macOS Big Sur (v. 11.7.7). I got the message that AutoDockTools needs to be updated. I would appreciate your assistance to identify the correct package I need to install in my computer.
can u please post a video for pyrx and biovia discovery studio
such an amazing content
I had tried the tutorial, but i get stuck as pip was not installed
I believe I keep getting an error: C:\Users\Public\Desktop\movie1.mp4: Permission denied. is there some sort of computer setting I need to change to allow mp4 downloads from chimeraX?
Looks like you are on windows. You can give your folder permission by Right-click the file or folder, and then click "Properties". Click the Security tab. Under Group or user names, click your name to see the permissions you have. Click Edit, click your name, select the check boxes for the permissions that you must have, and then click OK. PS. Make sure you are the admin of your system.
Thanks for the video, very helpful
Thank you for making this video.
Hello, I am watching your TH-cam well. When using the ball stick mode of the chimerax program Can you adjust the thickness of the cylinder and the size of the sphere?
May I know how to save hbonds in text file just by using the command line?
This was brilliant!! Thank you!!
I installed all correctly, however, the MGLtool does not work on my MAC as it says it needs update. Can someone help me? I cannot create virtual machine.
Why did u create copies of the protein? The reason
Plz...explain about chime tool
Very usefull, thank you
hello, why am not able to create a rama plot with this version? could you make a video? would be much appreciated! thanks!
Thank you so much for such detailed and well-explained tutorial videos. As a beginner, I am really grateful!
Good!
please how can i get autodock tools to work in MacOS 11 Big Sur ?
Awesome videos! Thanks very much for posting them. Would be great to see more!
Could you teach for docking by using open-babel on mac please ><
When I open the Autodock tool, it shows that the software needs to be updated. Could you help with this error message?
Thank you for the nice tutorial series! I am wondering if there is any command to remove the black border at the top and bottom of the videos recorded in chimeraX? Thanks again!
Thank you for the explain de principal menu options. Could you make a video explaying how to locate and visulalice a peptide inside de protein. Thank you!
My download option is not show
Thank you 🙏 Nice explanation 🎉
I have not yet received the email to continue the procedure
Great tutorial. Thank you very much. Learned a lot.
Hello sir, thank you for the video, I want to adjust the label but the 3 Button editing doesn't move
Sir , why we measure those distances? What are the benifits?
can you show how to label the alpha and beta helices and sheets
Could anybody tell me how to install Autodock tools in Mac? It says some upgrade OS TO Catalina. Could anyone tell me about it?
Thank you Brown Lab, made installation easy
On what basis you have selected residues 323 and 449... Why not other residues...?? Ho would we know which residue is showing interactions with ligand??
Great video you have explained so well. When are you coming up with succeeding videos of the series?
hi
I couldn't get ppar file at the end. What should I do?
Thank you! Could you please show how to design the bilipid layer background for membrane proteins?
Thanks for your super helpful vdo. I have a problem about PIP. It says " couldn't find index page for "pip". (maybe misspelled?). Any suggestion?
Incredibly helpful. Thank you!
Hello! Can you help me with Biovia discovery studio visualiser download in Mac? I can see its download links for windows and linux but can't seem to find a link for MacBook!
same 😭
I have heard it is better to use APBS plug in rather than vacuum electrostatics can anyone tell me why?
i just want Baudock vina to do ligand docking screening but i guess i need MGL tools too. Is there a way to install MGL tools for macOS Catalina (64 bit)? I've installed vina but can't open anything with it. i need the MGL tools right? or PyRx ?