Molecular Modeling Using PyMOL: 2 Measurements and Labeling | Brown Lab

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  • เผยแพร่เมื่อ 11 ก.ย. 2024

ความคิดเห็น • 14

  • @unclebully225
    @unclebully225 4 ปีที่แล้ว +2

    Thank you, very clear and well explained tutorials!

  • @lilyykwon163
    @lilyykwon163 4 ปีที่แล้ว

    Very well explained and so helpful. I really appreciate this video series. I’m hoping you would make more advance videos of pymol

  • @MARTINespartano1
    @MARTINespartano1 4 หลายเดือนก่อน

    Very clear and easy to understand

  • @maryamrachma5853
    @maryamrachma5853 4 ปีที่แล้ว +1

    thank you for sharing the video

  • @meenalchauhan9011
    @meenalchauhan9011 3 หลายเดือนก่อน

    great video, thanks! How to add scale bar for a 3D protein structure, given that I don't know the size of the protein in angstrom or nanometers?

  • @mayuribhattacharyya8961
    @mayuribhattacharyya8961 2 ปีที่แล้ว

    Sir , why we measure those distances? What are the benifits?

  • @lydiakisula7397
    @lydiakisula7397 2 ปีที่แล้ว

    Hello sir, thank you for the video, I want to adjust the label but the 3 Button editing doesn't move

  • @ramuparupalli9832
    @ramuparupalli9832 3 ปีที่แล้ว

    On what basis you have selected residues 323 and 449... Why not other residues...?? Ho would we know which residue is showing interactions with ligand??

  • @zareaalzarea836
    @zareaalzarea836 2 ปีที่แล้ว

    can you show how to label the alpha and beta helices and sheets

  • @egs8545
    @egs8545 3 ปีที่แล้ว

    I have heard it is better to use APBS plug in rather than vacuum electrostatics can anyone tell me why?

  • @ozgunteksoy4398
    @ozgunteksoy4398 4 ปีที่แล้ว

    Thank you for the video series. I wanna ask you why you choose histidine amino acid. Why did you choose the histidine for the particular reason or is there another reason?

    • @Brown_Lab
      @Brown_Lab  4 ปีที่แล้ว +2

      The biochemistry of what is/isn't an interaction isn't covered in the scope of the video, but the proximity of the nitrogen on the histidine to the functional group on the ligand suggests that there may be an interaction present. If you are more interested on classification of ligand-receptor interactions, I suggest looking into interaction fingerprints!

  • @swatisharma4956
    @swatisharma4956 4 ปีที่แล้ว

    On what basis you select histidine

    • @Brown_Lab
      @Brown_Lab  4 ปีที่แล้ว

      The biochemistry of what is/isn't an interaction isn't covered in the scope of the video, but the proximity of the nitrogen on the histidine to the functional group on the ligand suggests that there may be an interaction present. If you are more interested on classification of ligand-receptor interactions, I suggest looking into interaction fingerprints!