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medslicer
France
เข้าร่วมเมื่อ 9 มิ.ย. 2019
Welcome on our channel. We will try to teach you the basic functions of 3D slicer. Our goal is to share the knowledge we acquired in one year of using 3D slicer.
We will publish videos about the basics of Slicer, and we will show you how to make organ 3D reconstructions +/- segmentations, vascular reconstructions, volumetry, bone recunstruction...
Of course, this channel is only for illustration purpose and not for medical use!
We will publish videos about the basics of Slicer, and we will show you how to make organ 3D reconstructions +/- segmentations, vascular reconstructions, volumetry, bone recunstruction...
Of course, this channel is only for illustration purpose and not for medical use!
From black and white 2D CT scan to color 3D model (timelapse)
From black and white 2D CT scan to color 3D model (timelapse)
มุมมอง: 928
วีดีโอ
7. Pancreas and vessels with grow from seeds, and why you should always use crop volume
มุมมอง 4K3 ปีที่แล้ว
How to make pancreas and pancreas arterie reconstruction in 3D slicer. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
Animals 2: Cat (kidneys, bladder, uretera, lungs, spleen, bones)
มุมมอง 8634 ปีที่แล้ว
Many thanks to Dr Caron for the Dicoms! 3D reconstructions of a cat, on a non-portal CT scan with low resolution. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox
3D slicer SARS COV-2 (COVID) 3D reconstruction
มุมมอง 5K4 ปีที่แล้ว
How to make SARS COV-2 lesions 3D reconstruction with 3D slicer. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
Organ segmentation 1: Wrist bones, with model preparation for 3D printing
มุมมอง 6K4 ปีที่แล้ว
How to make wrist bone segmentation in 3D slicer, creating smooth models ready for 3D printing. 20:21 quality right after segmentation and how to improve model quality 22:35 final quality after smoothing effects 22:59 how to create OBJ or STL files with export tool Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox Fo...
Organ segmentation 4.3 : Liver segmentation and volumetry
มุมมอง 8K4 ปีที่แล้ว
How to make liver segmentation and volumetry with 3D slicer. In order to have a good result, you need to have a good CT scan injection, with high contrast between vessels and hepatic tissue. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
Animals 1: Seal body, blubber, and bones
มุมมอง 9544 ปีที่แล้ว
Permit number for the DICOMS: NMFS Permit 18902 I made a lot of mistakes during this video, i let them on purpose so you don't do the same! Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox
Organ segmentation 4.2 : Liver vessels
มุมมอง 8K4 ปีที่แล้ว
How to make vessels reconstruction with 3D slicer. In order to have a good result, you need to have a good CT scan injection, with high contrast between vessels and hepatic tissue. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
Organ segmentation 4.1 : Liver and inferior vena cava
มุมมอง 8K4 ปีที่แล้ว
How to make liver and inferior vena cava reconstruction in 3D slicer. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
CT scan anatomy for students, with .mrb file in description
มุมมอง 1.3K4 ปีที่แล้ว
This video is for students, to help them to have a better view of the anatomy on a CT scan, in 2D and 3D. Link for .mrb file: drive.google.com/open?id=1SQKAH5fCieVwcJi3_0zyXTnBCHGUGLmP This file must be opened with 3D slicer.
Organ segmentation 3.3 : Bronchi
มุมมอง 4.3K5 ปีที่แล้ว
How to make 3D bronchi reconstruction in 3D slicer. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
Organ segmentation 3.2 : Lungs vessels
มุมมอง 10K5 ปีที่แล้ว
How to make lungs 3D lung vascular reconstruction in 3D slicer. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
Organ segmentation 3.1 : Lungs, lobes, volumetry
มุมมอง 11K5 ปีที่แล้ว
How to make lungs 3D reconstruction, lobes reconstructions, and lungs/lobes volumetry in 3D slicer. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
Organ segmentation 2: Kidneys, vessels, volumetry
มุมมอง 13K5 ปีที่แล้ว
How to make kidney reconstruction, artery reconstruction and kidney volumetry in 3D slicer. Used extensions: -SegmentEditorExtraEffects -Quantitative Reporting -MarkupsToModel -PETDICOMExtension -SlicerDevelopmentToolbox For illustration purpose only, not for medical use.
Basics 3: How to create and export a 3D model
มุมมอง 2.2K5 ปีที่แล้ว
Basics 3: How to create and export a 3D model
Basics 1: Start with 3D Slicer, extensions, load CT scan, navigation, saving
มุมมอง 15K5 ปีที่แล้ว
Basics 1: Start with 3D Slicer, extensions, load CT scan, navigation, saving
Pls tutorial for the blender part 🙏🙏
Hi We are not able to get vessels on 3d kindly help with slicer 5.7
can this method segment the renal vein and Renal Artery Stenosis?
i am not getting the surface cut module in the 3d slicer
the volume of the video is too less
I am trying to segment a hyoid bone in horse CT. Making a whole bone as a one segment isn;t that hard but I have problem with segmenting out the cartilages that interconnect the parts od hyoid. Island tool nor playing with threshold seems to work out and I don't feel that making it manually is precise enough (and is time consuming asf.) Do you have any idea how to deal with this problem?
Thank you very much man
voice is very low
Excellent, can u do the brain also?
how do I modify the contrast like you did in the 11:46?
sadly, your voice is too quiet :(
What tools do you use to segment the colon?
Its extremely hard to hear your voice....and the words with th (everything) goes everysing with the accent...a bit difficult to understand.
Thank you for this video! very informative:) I am using this software to make 3D pictures. However, the lung tumor are so huge that when I am using smoothing, it cannot recognise tumour from outside of the lung. I do not know how I can fill the holes. I really need your help if you know how to solve this issue. Merci.
Can you make a video for tongue segmentation for its volume measurement
wish you can link us this dicom or some good dicom to work on
can you share this with us this dicom i couldn't find any good quality abdomen cts Dicom to work on
A really great tutorial. I've learned so much from your series. Where did you get such a high resolution scan?
Any chance to get the data set to try myself?
I'm a thoracic surgeon, and this is extremely useful for determining the segmental vasculature and airways, which we need to know when performing anatomic lung resections. Would love more videos like this. Perhaps more instruction on the basic functions of Slicer 3D would be good for those of us who are just getting started in this. Thanks for putting this together!
Hello how can you segmente the vein?
Hey I like your videos. Can you make a video about how to segment brain vessels manually?
@medslicer Please can you explain the extensions and modules used for this segmentation. I am trying to extract heptic artery next to a tumor portion in lever. please reply ASAP
Just a small remark from a radiologist: you did only segment the renal cortex in die arterial phase. This means, you did only segment half of the kidney, because you missed the medulla. Otherwise well done.😀
is there also a tutorial for the blender?
no sorry! i don't think i know blender enough to make a tuto...
Can you please share the location or link of the DICOM file for foot modeling. I would really appreciate your help.
THANK YOU VERY VERY VERY VERY MUCH. I APPRECIATE
thanks, where can i find this sample data file ?
i can't hear your voice clearly...
Can you give us please the hardware configuration of your pc just to know which one to choose because mine is too slow
Hi Alnafie, -CPU: i7-9700K (no overclock) -RAM: 32Go -GPU: RTX 3080Ti now, but when i did the video i had a GTX 1070 Cheers
Thank you for your videos. In version 4.10 i cannot prevent to remove other segmentations every time I try to overwrite them...in "modify other segments" "none" has been removed. Even trying "allow overlap" I cannot solve this issue. How can I fix it?
Thanks for this great video !
Thanks alot for your videos! may i know where can I get a liver dataset like this that is clear enough?
This video was a great help. Thank you!
By far the best tutorial for the segmentación tool.
This will work pretty good and faster with grow from seeds
sure. th-cam.com/video/8MkTXPB4Zns/w-d-xo.html
Hey wondering if you can add the link to download the CT DICOM file
Waiting for nvidia ai for auto segmentation of liver, pancreas, spleen. How to create own server without sending data to host server....... Thank you sir!!! For your videos.... It have helped me to manage many patients...... Thank you very much
Hello, icould i contact you for make some question about this software? i'm having problems and would really appreciated if someone can help me. I'm from Colombia and there is none can help me
Hello, Sure, what is your problem?
So grateful to see such a great tuturial. I am a postgraduate student ,searching for imaging features of COPD. I sincerely asking if you know something about CIP(chest imaging platform), an extension of 3D slicer. how to do the segmentation of pulmonary vessels by it ?It would be of great help if you can give some suggestion.My email:candytang@stu.gzhmu.edu.cn. i am anxiously looking forward to hearing from you Thanks a lot.
Hello, Sorry I never used CIP. But you can do the vessel segmentation with slicer !
@@medslicer2554 thank you so much for your reply. i have try to do the segmentation according to your tutorial. i can almost achieve the segmentation, but the result are not so precise, there are still some difficulties to conquered.but thank you all the same,sincerely.
In my window installed 4.10.2 slicer , to do surface cut the fiducial do not act properly to mark region of interest, that means the button is not active. so how I can fix this problem?
Very nice work! Thank you for sharing this (and all the other videos on your channel). You might be interested in a new Slicer extension that has been just added for COVID-19 lung segmentation and assessment (discourse.slicer.org/t/15006). It also comes with a COVID-19 patient CT sample data set that you can explore.
I have a .mrb but i can't open it with slicer ,please can you help me 😔😔
Do you have a pc or a mac ?
@@medslicer2554 pc
@@loscorralesdelasplazasdeto3586 try to open slicer and drag the mrb file into the 3D slicer app
@@medslicer2554 i see just black 😢
@@loscorralesdelasplazasdeto3586 then i don't kow sorry...
Poor sound quality
Chat fait réfléchir
MANO DO CÉU ! Tks a lot for this video, it's helped me a lot. For sure now thata i found your channel i'm gonna watch all your videos. I'm trying really hard to learn ho to use this software and till now your video is the form that i prefer. Tks <3 Love from Brazil, be safe
Your tutorials could only be improved by keeping the mic in the same room as you when you're filming.
Hahaha ikr
Very nice sir.. I just downloaded 3D slicer last week and looking forward to learn in details ...
Thank you so much for your work ! Look forward to watching and learning every time
can you share the 'DICOM' showed in this video for practice. Thanks a lot!