Tandy Warnow | Tutorial on Phylogenomic Tree Estimation | CGSI 2024
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- เผยแพร่เมื่อ 4 ก.พ. 2025
- Tandy Warnow | Tutorial on Phylogenomic Tree Estimation | CGSI 2024
Related Papers:
Mirarab, S., Reaz, R., Bayzid, M. S., Zimmermann, T., Swenson, M. S., & Warnow, T. (2014). ASTRAL: genome-scale coalescent-based species tree estimation. Bioinformatics, 30(17), i541-i548.
Legried, B., Molloy, E. K., Warnow, T., & Roch, S. (2021). Polynomial-time statistical estimation of species trees under gene duplication and loss. Journal of Computational Biology, 28(5), 452-468.
Willson, J., Roddur, M. S., Liu, B., Zaharias, P., & Warnow, T. (2022). DISCO: species tree inference using multicopy gene family tree decomposition. Systematic Biology, 71(3), 610-629.
Zaharias, P., & Warnow, T. (2022). Recent progress on methods for estimating and updating large phylogenies. Philosophical Transactions of the Royal Society B, 377(1861), 20210244.
Willson, J., Tabatabaee, Y., Liu, B., & Warnow, T. (2023). DISCO+ QR: rooting species trees in the presence of GDL and ILS. Bioinformatics Advances, 3(1), vbad015.
Tabatabaee, Y., Zhang, C., Warnow, T., & Mirarab, S. (2023). Phylogenomic branch length estimation using quartets. Bioinformatics, 39(Supplement_1), i185-i193.
Arasti, S., Tabaghi, P., Tabatabaee, Y., & Mirarab, S. (2024, April). Optimal Tree Metric Matching Enables Phylogenomic Branch Length Estimation. In International Conference on Research in Computational Molecular Biology (pp. 462-465). Cham: Springer Nature Switzerland.
Tabatabaee, Y., Roch, S., & Warnow, T. (2023). QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent. Journal of Computational Biology, 30(11), 1146-1181.
