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Computational Genomics Summer Institute CGSI
เข้าร่วมเมื่อ 3 มิ.ย. 2016
Xinzhu (April) Wei | Genotype Representation Graph: Enabling Efficient Analysis of ... | CGSI 2024
Xinzhu (APRIL) Wei | Genotype Representation Graph/ Enabling Efficient Analysis of Biobank-Scale Data | CGSI 2024
Related Papers:
DeHaas, D., Pan, Z., & Wei, X. (2024). Genotype Representation Graphs: Enabling Efficient Analysis of Biobank-Scale Data. bioRxiv, 2024-04.
YC Brandt, D., Wei, X., Deng, Y., Vaughn, A. H., & Nielsen, R. (2022). Evaluation of methods for estimating coalescence times using ancestral recombination graphs. Genetics, 221(1), iyac044.
Kelleher, J., Wong, Y., Wohns, A. W., Fadil, C., Albers, P. K., & McVean, G. (2019). Inferring whole-genome histories in large population datasets. Nature genetics, 51(9), 1330-1338.
Related Papers:
DeHaas, D., Pan, Z., & Wei, X. (2024). Genotype Representation Graphs: Enabling Efficient Analysis of Biobank-Scale Data. bioRxiv, 2024-04.
YC Brandt, D., Wei, X., Deng, Y., Vaughn, A. H., & Nielsen, R. (2022). Evaluation of methods for estimating coalescence times using ancestral recombination graphs. Genetics, 221(1), iyac044.
Kelleher, J., Wong, Y., Wohns, A. W., Fadil, C., Albers, P. K., & McVean, G. (2019). Inferring whole-genome histories in large population datasets. Nature genetics, 51(9), 1330-1338.
มุมมอง: 99
วีดีโอ
Timothy Chang | Modeling Alzheimer's disease Risk in Real World Data | CGSI 2024
มุมมอง 47วันที่ผ่านมา
Timothy Chang | Modeling Alzheimer's disease Risk in Real World Data | CGSI 2024 Related Papers: Fu, M., Yan, Y., Olde Loohuis, L. M., & Chang, T. S. (2023). Defining the distance between diseases using SNOMED CT embeddings. Journal of Biomedical Informatics, 139, 104307. doi.org/10.1016/j.jbi.2023.104307 Jørgensen, I. F., Aguayo-Orozco, A., Lademann, M., & Brunak, S. (2020). Age-stratified lon...
Smita Krishnaswamy | Uncovering Cellular dynamics and metabolism with Geometric deep ...| CGSI 2024
มุมมอง 69วันที่ผ่านมา
Smita Krishnaswamy | Uncovering Cellular dynamics and metabolism with Geometric deep learning and optimal transport | CGSI 2024 Related Papers: proceedings.mlr.press/v231/bhaskar24a/bhaskar24a.pdf proceedings.neurips.cc/paper/8773-latent-ordinary-differential-equations-for-irregularly-sampled-time-series.pdf arxiv.org/abs/1911.07532
Shaojie Zhang | PBWT based Algorithms for Large Cohort Genetics | CGSI 2024
มุมมอง 24วันที่ผ่านมา
Shaojie Zhang | PBWT based Algorithms for Large Cohort Genetics | CGSI 2024 Related Papers: 1. Durbin, R. (2014). Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT). Bioinformatics, 30(9), 1266-1272. 2. Naseri, A., Holzhauser, E., Zhi, D., & Zhang, S. (2019). Efficient haplotype matching between a query and a panel for genealogical search. Bioinformat...
Saharon Rosset | Using Classical Algorithms for Modern Applications: MCMC for Tail Calculations, EM
มุมมอง 14วันที่ผ่านมา
Saharon Rosset | Using Classical Algorithms for Modern Applications/ MCMC for Tail Calculations, EM for PET reconstruction | CGSI 2024 Related Papers: Riklin I. Incorporating Random Coincidences in EM-Based PET Imaging Reconstruction. MSc Thesis at Tel Aviv University under the supervision of Saharon Rosset, 2023. Available from: www.tau.ac.il/~saharon/files/RiklinThesis.pdf Halperin S. Estimat...
Sagiv Shifman | Using pooled CRISPR screens to study biology | CGSI 2024
มุมมอง 48วันที่ผ่านมา
Sagiv Shifman | Using pooled CRISPR screens to study biology | CGSI 2024 Sagiv Shifman | Using pooled CRISPR screens to study biology Related Papers: Bock, C., Datlinger, P., Chardon, F., Coelho, M. A., Dong, M. B., Lawson, K. A., ... & Zhuang, X. (2022). High-content CRISPR screening. Nature Reviews Methods Primers, 2(1), 1-23. Shohat, S., & Shifman, S. (2019). Genes essential for embryonic st...
Rahul Krishnan | Bridging the gap: Deep Learning and Causality | CGSI 2024
มุมมอง 44วันที่ผ่านมา
Rahul Krishnan | Bridging the gap: Deep Learning and Causality | CGSI 2024 Related Papers: Balazadeh, Vahid, et al. "Sequential Decision Making with Expert Demonstrations under Unobserved Heterogeneity." arXiv preprint arXiv:2404.07266 (2024). Chen, Asic, et al. "Structured Neural Networks for Density Estimation and Causal Inference." Advances in Neural Information Processing Systems 36 (2024)....
Pavel Pevzner | Uni alignment: A Parameter free Framework for Fast and Accurate...| CGSI 2024
มุมมอง 34วันที่ผ่านมา
Pavel Pevzner | Uni-alignment: A Parameter-free Framework for Fast and Accurate Sequence Alignment | 2024 Related Papers: Andrey Bzikadze and Pavel Pevzner, UniAligner: a parameter-free framework for fast sequence alignment. Nat Methods, 2023
Nandita Garud | Inference of the selective effects and demographic histories of human... | CGSI 2024
มุมมอง 29วันที่ผ่านมา
Nandita Garud | Inference of the selective effects and demographic histories of human gut commensals | CGSI 2024 Related Papers: Wolff R and Garud NR. Pervasive selective sweeps across human gut microbiomes. bioRxiv (2023). Chen D.W. and Garud N.R. "Rapid evolution and strain turnover in the infant gut microbiome." Genome Research, 2022. Garud NR*, Good BH*, Hallatschek O, and Pollard KS. "Evol...
Lisa Bastarache | The real world phenotypic presentation of Mendelian disease | CGSI 2024
มุมมอง 19วันที่ผ่านมา
Lisa Bastarache | The real world phenotypic presentation of Mendelian disease | CGSI 2024 Related Papers: Shendure J, Findlay GM, Snyder MW. Genomic Medicine-Progress, Pitfalls, and Promise. Cell. 2019 Mar 21;177(1):45-57. doi: 10.1016/j.cell.2019.02.003. PMID: 30901547; PMCID: PMC6531313. Zeng C, Bastarache LA, Tao R, Venner E, Hebbring S, Andujar JD, Bland ST, Crosslin DR, Pratap S, Cooley A,...
Haoyu Cheng | Reconstructing Every Haplotype with De Novo Assembly | CGSI 2024
มุมมอง 43วันที่ผ่านมา
Haoyu Cheng | Reconstructing Every Haplotype with De Novo Assembly | CGSI 2024 Related Papers: 1. Cheng, H., Concepcion, G. T., Feng, X., Zhang, H., & Li, H. (2021). Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm. Nature methods, 18(2), 170-175. 2. Cheng, H., Jarvis, E. D., Fedrigo, O., Koepfli, K. P., Urban, L., Gemmell, N. J., & Li, H. (2022). Haplotype-resolved...
Haky Im | On the problem of inflation in TWAS and other xWAS | CGSI 2024
มุมมอง 20วันที่ผ่านมา
Haky Im | On the problem of inflation in TWAS and other xWAS | CGSI 2024 Related Papers: On the problem of inflation in transcriptome-wide association studies Yanyu Liang, Festus Nyasimi, Hae Kyung Im bioRxiv 2023.10.17.562831; doi: doi.org/10.1101/2023.10.17.562831
Jingyi Jessica Li | Categorization of 31 computational methods to detect spatially... | CGSI 2024
มุมมอง 55วันที่ผ่านมา
Jingyi Jessica Li | Categorization of 31 computational methods to detect spatially variable genes from spatially resolved transcriptomics data | CGSI 2024 Related Papers: Yan, G., Hua, S. H., & Li, J. J. (2024). Categorization of 31 computational methods to detect spatially variable genes from spatially resolved transcriptomics data. arXiv. arxiv.org/abs/2405.18779
Mohammed El Kebir | Introduction to Integer Linear Programming | CGSI 2024
มุมมอง 65วันที่ผ่านมา
Mohammed El-Kebir | Introduction to Integer Linear Programming | CGSI 2024 Related Papers: [1] Wolsey, L. A. (1998). Integer programming. Wiley. [2] El-Kebir, M. (2018). SPhyR: Tumor phylogeny estimation from single-cell sequencing data under loss and error. Bioinformatics, 34(17), i671-i679. [3] El-Kebir, M., Oesper, L., Acheson-Field, H., & Raphael, B. J. (2015). Reconstruction of clonal tree...
Irene Chen | Leveraging Large Datasets and Large Language Models for Healthcare | CGSI 2024
มุมมอง 105วันที่ผ่านมา
Irene Chen | Leveraging Large Datasets and Large Language Models for Healthcare | CGSI 2024 Related Papers: Antoniak et al, NLP for Maternal Healthcare: Perspectives and Guiding Principles in the Age of LLMs, FAccT 2024 Chen et al, Ethical Machine Learning for Healthcare, Annual Reviews of Biomedical Data Science Miao et al, Identifying Reasons for Contraceptive Switching from Real-World Data U...
Ahmed Alaa | Applications of Conformal Prediction in Medicine | CGSI 2024
มุมมอง 300วันที่ผ่านมา
Ahmed Alaa | Applications of Conformal Prediction in Medicine | CGSI 2024
Matthew Stephens | Empirical Bayes and its applications: shrinkage, hypothesis test ... | CGSI 2024
มุมมอง 8714 วันที่ผ่านมา
Matthew Stephens | Empirical Bayes and its applications: shrinkage, hypothesis test ... | CGSI 2024
Corey Arnold | Applications of AI in Healthcare: From the EHR to Imaging | CGSI 2024
มุมมอง 8221 วันที่ผ่านมา
Corey Arnold | Applications of AI in Healthcare: From the EHR to Imaging | CGSI 2024
Iman Hajirasouliha | AI Models in Reproductive Medicine | CGSI 2024
มุมมอง 3721 วันที่ผ่านมา
Iman Hajirasouliha | AI Models in Reproductive Medicine | CGSI 2024
Kayhan Batmanghelich | Synthetic Data In Medical Imaging: Are we there yet? | CGSI 2024
มุมมอง 4421 วันที่ผ่านมา
Kayhan Batmanghelich | Synthetic Data In Medical Imaging: Are we there yet? | CGSI 2024
Daniel Tward | Classical and Deep Learning Approaches to Longitudinal Modeling in ... | CGSI 2024
มุมมอง 4121 วันที่ผ่านมา
Daniel Tward | Classical and Deep Learning Approaches to Longitudinal Modeling in ... | CGSI 2024
Jason Ernst | Computational Methods for Cross species Epigenomic Analyses | CGSI 2024
มุมมอง 11421 วันที่ผ่านมา
Jason Ernst | Computational Methods for Cross species Epigenomic Analyses | CGSI 2024
Rajesh Ranganath | Digging into the foundations of generative AI for healthcare | CGSI 2024
มุมมอง 5021 วันที่ผ่านมา
Rajesh Ranganath | Digging into the foundations of generative AI for healthcare | CGSI 2024
Jeffrey Chiang | Towards foundation models for Electronic Health Records | CGSI 2024
มุมมอง 2621 วันที่ผ่านมา
Jeffrey Chiang | Towards foundation models for Electronic Health Records | CGSI 2024
Jazlyn Mooney | Using dogs as a model system in genomics | CGSI 2024
มุมมอง 2321 วันที่ผ่านมา
Jazlyn Mooney | Using dogs as a model system in genomics | CGSI 2024
Julia Vogt | Echoes Over Time: Detecting Heart Defects in Newborns | CGSI 2024
มุมมอง 1621 วันที่ผ่านมา
Julia Vogt | Echoes Over Time: Detecting Heart Defects in Newborns | CGSI 2024
Matthew Stephens | Empirical Bayes Matrix Factorization and Parts based Representations | CGSI 2024
มุมมอง 7821 วันที่ผ่านมา
Matthew Stephens | Empirical Bayes Matrix Factorization and Parts based Representations | CGSI 2024
Casey Greene | Some issues with deconvolution using single cell profiles | CGSI 2024
มุมมอง 3421 วันที่ผ่านมา
Casey Greene | Some issues with deconvolution using single cell profiles | CGSI 2024
Gamze Gürsoy | Privacy preserving techniques for precision medicine | CGSI 2024
มุมมอง 2321 วันที่ผ่านมา
Gamze Gürsoy | Privacy preserving techniques for precision medicine | CGSI 2024
Christoph Lippert | Conservation of Historic Patient Records from Walter Kempner's ... | CGSI 2024
มุมมอง 1021 วันที่ผ่านมา
Christoph Lippert | Conservation of Historic Patient Records from Walter Kempner's ... | CGSI 2024
Amazing talk, would love to have a teacher like her ^^ so passionate and fun.
The presenter is so cool!
The Q&A of this should be fun! It's sad that it wasn't included in the video.