Thanks for all of your vedio. Could you please share some video about small and small molecule structure calumniating using Discovery Studio? Thank You!
What CDOCKER score is suitable for pulication. And i request for your insight of how i can relate this to other docking softwares for the validation of my results coz,,,,CDOCKER scores usually be in -20's.....above...yet in other wares like autodock,,it will be in -6,,-7....
Great video and simple explanation, my question is should I remove all ligands and add H atoms as a pre docking step? Secondly what does unfavorable bump interactions or unfavorable doner interactions mean? Lastly, I followed ur procedure and all I got is failed to generate a complex... Any suggestions? Thanks
Thank you for your video, this is very nice. actually, i am biginner in this area. i have some question about docking: 1) in my work, i use CDOCKER for docking, but you use libdock, so what is it different between this tools? 2) i am also curious about this content, may be you can explan about this program for biginner students in the next content.
If you use CDOCKER you must prepare the receptor protein and ligand before running the dock, in libdock you don't have to prepare and minimize the data prior to docking
sir thank you for your video. Sir. I downloaded and installed the biovia DS visualizer. But dock ligands options are not in that software. How to enable the dock ligand option. Is any cracked version available?
Sir. I downloaded and installed the biovia DS visualizer. But dock ligands options are not in that software. How to enable the dock ligand option. Is any cracked version available.
tried this tutorial but i dont have the "dock ligand" option. all i have are just "view interaction" and "define and edit binding site". what should i do?
Thankyousomuch sir !! The videos are really helpful. You're doing a great job ! :) Request : can you please make a video on active site prediction using online server and software like pymol etc, give bit details on result analysis. Thankyou again! :)
I am new to this application. Can someone explain to me? I am using the Discovery Studio Visualizer application. Some tabs are missing from the application in this video, how can I activate them? or how can I download this app?
Hi there. Hope you can help. I actually accidentally right clicked thr view interaction and clicked the close button in the receptor - ligand interaction section . Now, I can't view any interaction and cannot choose 2D diagram. Hope you can help me, and make the view interaction button is visible again. Thank you so much
can you please make video on molecular dynamics simulations using discovery studio. I am stuck with simulation my rmsd value for receptor is around 5 A and for ligand is 17 A
Thanks you for this video,,but please if we have two drug molecules (like: flucanozole and Ibuprofen) , in this case can we dock these molecules (complex formation) and obtain interactions?
Dear Sir, when I am opening by following your method, in my down loaded software I am not able to see following icons ..dock ligands, highg throughput screening, docking optimization, scoring etc..kindly help me to find all those in my software.
Its very helpful. Guide me to get the crack of latest discovery studio or how to enable its additional features. if you have crack let me know i am interested. look forward for your response
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Thank you for you video, but my question is about the Dock ligand options is not available in my discovery studio software. Kindly tell me about this.
Good explanations
Sir, thanks for this valuable lecture. Kinly guide about, How to satisfy the valency in pdb ID chain ? Using discovery studio software.
Hello, I´m fron Perú, It´s awesome, i need to learning it.
Nice content buddy keep it up..waiting for more such videos.
Sure. Thanks for your valuable feedback and support.
Thanks for all of your vedio. Could you please share some video about small and small molecule structure calumniating using Discovery Studio? Thank You!
Thanks for your support. Sure soon I will upload.
good explain sir can you show how do the organic metal. regards
What CDOCKER score is suitable for pulication. And i request for your insight of how i can relate this to other docking softwares for the validation of my results coz,,,,CDOCKER scores usually be in -20's.....above...yet in other wares like autodock,,it will be in -6,,-7....
Great video and simple explanation, my question is should I remove all ligands and add H atoms as a pre docking step? Secondly what does unfavorable bump interactions or unfavorable doner interactions mean? Lastly, I followed ur procedure and all I got is failed to generate a complex... Any suggestions? Thanks
Thank you for your video, this is very nice. actually, i am biginner in this area. i have some question about docking: 1) in my work, i use CDOCKER for docking, but you use libdock, so what is it different between this tools? 2) i am also curious about this content, may be you can explan about this program for biginner students in the next content.
If you use CDOCKER you must prepare the receptor protein and ligand before running the dock, in libdock you don't have to prepare and minimize the data prior to docking
Thank you for your video! I have a doublt: when I use cyp51 for docking with azoles, do I need to remove the heme like you did?
please give the link f previous video.
Sir, my Discovery studio is not showing lig dock block, it's shows only view interaction & define and edit binding site.??
sir thank you for your video.
Sir. I downloaded and installed the biovia DS visualizer. But dock ligands options are not in that software. How to enable the dock ligand option. Is any cracked version available?
Sir i am not getting the dock ligand option, what should i do?
Sir. I downloaded and installed the biovia DS visualizer. But dock ligands options are not in that software. How to enable the dock ligand option. Is any cracked version available.
Same doubt
tried this tutorial but i dont have the "dock ligand" option. all i have are just "view interaction" and "define and edit binding site". what should i do?
Same here. 😕
can i use this software for protein protein docking . i want to check their interaction. plzz help
Please help me. I don't find "Dock ligand" option in "Receptor-Ligand Interaction" tools on my Discovery studio. What should I do?
can we predict docking score also!
Sir the molecular docking is successful
After docking using ds visualizer, how to know about docking score of receptor-ligand complex?
sir mera discovery studio pe dock ligand or is k nichy waley dono options nae aa rahy, kindly can you help me what's the fault present here?
Hi sir is discovery studio client different with biovia discovery studio visualization
Thankyousomuch sir !! The videos are really helpful. You're doing a great job ! :)
Request : can you please make a video on active site prediction using online server and software like pymol etc, give bit details on result analysis.
Thankyou again! :)
Thanks for your support. Sure.
i am unable to find docking option in discovery studio. Please help
Sir.. I have a doubt. How to convert my own organic compound (synthesized in lab) into ligand?
I am new to this application. Can someone explain to me? I am using the Discovery Studio Visualizer application. Some tabs are missing from the application in this video, how can I activate them? or how can I download this app?
Sir, I'm not able to spin my molecule and protein, pls suggest some way out for this.
Pls can you send me the link to download the Discovery Studio Client?...
By which parameters we can sort out the best pose
how i can download the full version
I have Discovery Studio Visualizer and the option Docking Optimization I could´nt found, how can I get it?
Put a video on the calculation of Binding Energies for the lig - receptor
Can you kindly drop the link for downloading 'discovery studio client' ?? NOT DS VISUALIZER
Hi there. Hope you can help. I actually accidentally right clicked thr view interaction and clicked the close button in the receptor - ligand interaction section . Now, I can't view any interaction and cannot choose 2D diagram. Hope you can help me, and make the view interaction button is visible again. Thank you so much
can you please make video on molecular dynamics simulations using discovery studio. I am stuck with simulation my rmsd value for receptor is around 5 A and for ligand is 17 A
Thank you very much for the tutorial. This DS 2016 Clien, do need to install Pipeline Pilot DS to work?
Thanks for your valuable feedback. Yes we have install pipeline pilot DS.
@@crkphy Thank you very much. Can make a tutorial how to install DS 2016 client+Pipeline pilot?. Thanks.
plz show binding energy ?
Thanks you for this video,,but please if we have two drug molecules (like: flucanozole and Ibuprofen) , in this case can we dock these molecules (complex formation) and obtain interactions?
Thanks for your valuable feedback. In future videos I will demonstrate how to do.
how to analyze energy of each docking pose here?
sir can you please share the link of discovery studio client for download
how to find no of hydrogen bonds involved in the interaction
How do you get low ping at localhost 9943 ?
where I can get docking energy from this method?
Dear Sir, when I am opening by following your method, in my down loaded software I am not able to see following icons ..dock ligands, highg throughput screening, docking optimization, scoring etc..kindly help me to find all those in my software.
Same problem with mine also!
Same for me if you found a solution help me please
Discovery studio is not free sofrwore. So options will not show
hello please explain about forcefeild tool and how to save file after force feild applied
Make video on docking with metallic ion containing protein like Zn and Cu
Hi, can you provide the link to download this software
Its very helpful. Guide me to get the crack of latest discovery studio or how to enable its additional features. if you have crack let me know i am interested.
look forward for your response
How to calculate RMSD value sir?
The version that you are using is a paid one??
S
@@crkphy can you please inform me how much does it cost?
@@crkphy thanks for tutorial, what is the cost of software
Is it free? Or do you have a cracked license, plz?
I have discovery studio visualizer, how to get discovery studio client?
By purchasing license u can get it.
@@crkphy Do you have any tutorial on viewing docking results through pymol?
@@crkphy Could you suggest me the procedure for purchasing license file of ds client?
Is this software available free ?
It's a paid software, right
S
I dont see the "Dock Ligands" option in my DS visualiser. Can u please help?
Me too. Can anyone help with this?