Thanks so much for a great video:) I am trying to indicate the number of proteins differentially expressed in 3 datasets using a venn diagram. Since each area has a different number of proteins, they are not really supposed to "add up". I am not sure why, but r seems to think they should "add up"? My command line: draw.triple.venn(area1=151,area2=145,area3=283,n12=20,n13=12,n23=27,n123=81) and I get an error: Impossible: a2
Hey, the error occurrs because n12 + n13 + n23 is smaller than n123. This is logically infeasible. Could you please check those numbers? I hope this helps! Joachim
Thank you Yavuz. Have a look at the documentation of the VennDiagram package: cran.r-project.org/web/packages/VennDiagram/VennDiagram.pdf The font size could be increased with the cex argument (e.g. draw.single.venn(area = 10, cex = 10)) and you will also find more information on creating the main title. Regards, Joachim
Really thank you so much for your unlimited support and in sharing your ample knowledge. if you have a video tutorial related with hill diversity (q=0, q=1, and q=2) for species richness and diversity using hillR packages, please share us. thank you again for your time and collaboration
Hi Meseret, thank you very much for the wonderful feedback and for the topic suggestion! I don't have any experience with the hillR package yet, but this might be an interesting topic to talk about in the future. I'll keep it in mind. Regards, Joachim
Hello, As far as I know, using this package to plot a Venn diagram with 6 lists is not possible. However, you can use the Venn package instead. See the example below: #install.packages("venn") library(venn) set.seed(123) # for reproducibility A
Hello, Thank you for your positive feedback! Venn diagrams can quickly become complex and difficult to read with too many sets; also, many Venn diagram packages can only handle a certain amount of sets, usually 4-5 sets at max. Therefore I would suggest you use another way to visualize your datasets. Some options are heatmaps: statisticsglobe.com/heatmap-in-r, and faceted stacked bar plots: statisticsglobe.com/draw-stacked-bars-within-grouped-barplot-r. If you have any further questions, please let me know. Best, Cansu
Greetings Joaquín, I have problems with the installation of the 'random' and 'VennDiagram' packages, because it does not allow me to add it to my directory. I use version 4.0 of R. Do you know of any alternative to achieve this? Thank you for all your valuable contributions. They are short but very good scripts. Cheers...
How can I change it so that area 1 circle appears on the left hand side of the plot? The script always automatically places the biggest circle on the left, no matter which area number it is. Thank you
Hey, please have a look at the documentation of the functions: www.rdocumentation.org/packages/VennDiagram/versions/1.6.20/topics/draw.triple.venn For instance, you may use the reverse argument to mirror the figure along the vertical axis. I hope that helps! Joachim
Hey Rakesh, Thanks a lot for the kind words! One solution would be to use the gridExtra package. Have a look here: stackoverflow.com/questions/21202876/adding-title-and-sub-title-to-venn-diagram Regards, Joachim
Hey Safia, yes this is also possible based on the VennDiagram package by using the draw.quintuple.venn function. You can find the documentation of the function here: finzi.psych.upenn.edu/library/VennDiagram/html/draw.quintuple.venn.html Regards, Joachim
Hey, I think this is possible using the venn package: cran.r-project.org/web/packages/venn/venn.pdf I have never done this myself though. I hope it helps! Joachim
Hey Sam, I only figured out how to draw venn diagrams with up to 7 sets (see page 4 of this documentation). Unfortunately, I also don't know how to add even more sets. Regards, Joachim
@@palomita75 Sorry for the late reply, I have not seen your request before :) Here is the link: cran.r-project.org/web/packages/venn/venn.pdf Not sure why it has not been added to my previous comment. Regards, Joachim
this just saved my life and my friend's THANK U SO MUCH
Glad the video helped you out, thank you very much for the feedback!
helped so much, thank you
Hey Aline, thank you very much for the feedback! Glad the video has been helpful.
Thanks so much for a great video:) I am trying to indicate the number of proteins differentially expressed in 3 datasets using a venn diagram. Since each area has a different number of proteins, they are not really supposed to "add up". I am not sure why, but r seems to think they should "add up"? My command line: draw.triple.venn(area1=151,area2=145,area3=283,n12=20,n13=12,n23=27,n123=81) and I get an error: Impossible: a2
Hey, the error occurrs because n12 + n13 + n23 is smaller than n123. This is logically infeasible. Could you please check those numbers? I hope this helps! Joachim
my life savior, thank you
Thank you so much for the kind words! ;)
This works for me. Thank you!
It would be great to be able to specify fonts as well as a title for the diagram.
Thank you Yavuz. Have a look at the documentation of the VennDiagram package: cran.r-project.org/web/packages/VennDiagram/VennDiagram.pdf The font size could be increased with the cex argument (e.g. draw.single.venn(area = 10, cex = 10)) and you will also find more information on creating the main title. Regards, Joachim
Exactly what I was looking for, thank you so much!
Glad I could help! :)
Perfect! That's exactly what I needed! Thank you!
Glad it helped Joanna, thank you for the nice comment!
Really thank you so much for your unlimited support and in sharing your ample knowledge. if you have a video tutorial related with hill diversity (q=0, q=1, and q=2) for species richness and diversity using hillR packages, please share us.
thank you again for your time and collaboration
Hi Meseret, thank you very much for the wonderful feedback and for the topic suggestion! I don't have any experience with the hillR package yet, but this might be an interesting topic to talk about in the future. I'll keep it in mind. Regards, Joachim
Thank you so much for your remarkable video lecture. Q
Q. suggest me on how to add the residual into the venn diagram plot?
Thanks for the kind words! Could you specify what you mean with residuals in this context?
Thank you! will you have an example with 6 circles? i wish to learn
Hello,
As far as I know, using this package to plot a Venn diagram with 6 lists is not possible. However, you can use the Venn package instead. See the example below:
#install.packages("venn")
library(venn)
set.seed(123) # for reproducibility
A
@@cansustatisticsglobe 😮 thanks, i didn’t know
@@agentgunnso cool!
Great tutorial!
Thanks Nathan! :)
Great work bro.
Thanks a lot Wakjira! :)
Thank you. Very helpful!
Thank you for the nice feedback, that's great to hear! :)
Great video! thank you
Glad you liked it Govinda! :)
This is helpful! Thank you!
Thank you for the comment, this is nice to hear! :)
Thanks a lot. That was helpful.
Thank you Abdo!
Thank You very much
You're most welcome, Hakanimamoglu. We are glad you find the video tutorial helpful!
That's a awesome video, thank you
But i need a Venn with 10 circles, do you know how can I make this?
Hello,
Thank you for your positive feedback! Venn diagrams can quickly become complex and difficult to read with too many sets; also, many Venn diagram packages can only handle a certain amount of sets, usually 4-5 sets at max. Therefore I would suggest you use another way to visualize your datasets. Some options are heatmaps: statisticsglobe.com/heatmap-in-r, and faceted stacked bar plots: statisticsglobe.com/draw-stacked-bars-within-grouped-barplot-r. If you have any further questions, please let me know.
Best,
Cansu
Greetings Joaquín, I have problems with the installation of the 'random' and 'VennDiagram' packages, because it does not allow me to add it to my directory. I use version 4.0 of R. Do you know of any alternative to achieve this?
Thank you for all your valuable contributions. They are short but very good scripts. Cheers...
Hey Paul, thanks for the kind comment! Have you tried updating to the latest version? I'm using R version 4.1.0. Regards, Joachim
Thanks, also I am wondering how this work for the real categorical or numerical dataset? Could you please share the one?
Hey Suraj, could you specify how your data looks like in some more detail? Regards, Joachim
Thank a lot!
Hi Batia, Thanks for the kind response, we hope the video was helpful!
How can I change it so that area 1 circle appears on the left hand side of the plot? The script always automatically places the biggest circle on the left, no matter which area number it is.
Thank you
Hey, please have a look at the documentation of the functions: www.rdocumentation.org/packages/VennDiagram/versions/1.6.20/topics/draw.triple.venn For instance, you may use the reverse argument to mirror the figure along the vertical axis. I hope that helps! Joachim
Thank you for the amazing demonstration. Can you also let us know how to add title in the venn diagram?
Hey Rakesh, Thanks a lot for the kind words! One solution would be to use the gridExtra package. Have a look here: stackoverflow.com/questions/21202876/adding-title-and-sub-title-to-venn-diagram Regards, Joachim
Can i make Venn diagram with 5 sets?
Hey Safia, yes this is also possible based on the VennDiagram package by using the draw.quintuple.venn function. You can find the documentation of the function here: finzi.psych.upenn.edu/library/VennDiagram/html/draw.quintuple.venn.html Regards, Joachim
Can u explain how to create venn diagram using 6 sets
Hey, I think this is possible using the venn package: cran.r-project.org/web/packages/venn/venn.pdf I have never done this myself though. I hope it helps! Joachim
i need you draw only one diagram and put the elements of sets thanks
Hey Antonio, could you specify in some more detail how your venn diagram should look like? I'm not sure if I get your problem. Regards, Joachim
how to make a venn diagram with more than 7datasets?
Hey Sam, I only figured out how to draw venn diagrams with up to 7 sets (see page 4 of this documentation). Unfortunately, I also don't know how to add even more sets. Regards, Joachim
@@StatisticsGlobe Hi, I am also interested in doing a Venn Diagram with 6 sets, where is "this documentation"? ;) thanks!!!
@@palomita75 Sorry for the late reply, I have not seen your request before :) Here is the link: cran.r-project.org/web/packages/venn/venn.pdf Not sure why it has not been added to my previous comment. Regards, Joachim