its by far the most popular genomics package out there. it still sux a bit especially because of package versioning. but for free it generally does the job if you have the patience
@@swingdancelab Most likely for the code bloat that S4 results in and that R is a poor base for the bioconductor concept would be my guess. I regularly crash R on my pc with 32gb of ram when I'm working with larger summarizedexperiments; the bioconductor concept with R as the foundation really doesn't scale well. It's unfortunate as there are so many packages already written in it that it's not really possible to 'turn back' and start again with a more suitable foundation so we're just stuck with it.
Fantastic workshop! Thank you for posting it =)
Such a great tutorial!!!
Super! more more videos!👌 🤩
I wish the presenter elaborated on why they, 'think it has paid off', instead of just stating their opinion without justification (15:57).
where can I find the notebook file?
If you search "brown university bioconductor introduction" it will be the first link
Awesome
thx
ʀᴏyᴀʟ ᴍᴏɴᴜ
Bioconductor is the worst package ever, I wonder who takes this garbage seriously
why do you think that?
its by far the most popular genomics package out there. it still sux a bit especially because of package versioning. but for free it generally does the job if you have the patience
then wtf do YOU use
Please can you say something that doesn't hurt my feelings?
@@swingdancelab Most likely for the code bloat that S4 results in and that R is a poor base for the bioconductor concept would be my guess. I regularly crash R on my pc with 32gb of ram when I'm working with larger summarizedexperiments; the bioconductor concept with R as the foundation really doesn't scale well. It's unfortunate as there are so many packages already written in it that it's not really possible to 'turn back' and start again with a more suitable foundation so we're just stuck with it.