A GROMACS Tutorial: Creating Index for Ligand Atoms & Computing RMS Fluctuation

[@ehsanmohebbi4426]

Thank you doc❤

[@adityashelar749]

Heyy can u plz help when ever i convert any logand into pdbqt format in autodock it get break into pieces how to solve this issue

[@al1r3z49]

Hi. You can fix the pdb file with spdbv. In the tools menu there is a fix option., quick and dirty. It may splve your problem.