Boxplot with Letters Indicating Significant Differences
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- เผยแพร่เมื่อ 5 ก.ค. 2024
- One-Way ANOVA, Tukey’s test, Box Plot with ggplot
R code: statdoe.com/one-way-anova-and...
Courses: statdoe.com/courses/
0:00 Introduction
0:46 Description of the data set
1:01 Loading the libraries and the data set
1:55 Analysis of Variance - ANOVA
2:30 Tukey's test
3:10 Letters do indicate significant differences (cdl)
3:50 Table with mean, third quantile and cdl
5:05 Basic Boxplot
6:18 Customising axis titles, theme and gridlines
7:08 Adding the letters to the boxplot
8:20 Adding colours to the plot
8:45 Colouring the boxes according to the median value
Packages: ggplot2, multcompView, dplyr
Main functions: aov, TukeyHSD, multcompLetters4, summarise, ggplot, geom_boxplot, geom_text, scale_fill_brewer, theme_bw, show.legend, labs .
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Thank you for this great video. Very clear and easy to follow. It has helped me produce some beautiful boxplots today! Please do more!
Thank you! Will do!
EXCELLENT explanations !!!
Great video! I’ll put this lesson in practice right away!! Thanks again!!
Thanks!
This was very helpful! Thanks a lot!
Very neat and simple 👏👏
VERY useful!! Thank you!!
Great video, Rosane
Great video, thank you so much!
Excelente vídeo. Muchas gracias.
This video was so so so helpful! Thank you so much!
Glad it was helpful!
Hi Rosane, could you please a video on how to add significant letters on box plot for the split-plot data with main factor and sub-factor? Thank you.
Great video. Would be possible to do the same on a boxplot for a two way ANOVA?
Que hermosa profe! muchas gracias! salva una tesis
great video...thank you!
Amazing video! Thanks so much. I have tried using the same method for Kruskal wallis and dunn test. But couldnt get the result. Im stuck at cld. Could you please help me out with this? Thank you.
thanks for the tutorial!
Muito bom. Parabéns!
Thank you so much!
Thank you for useful video. Could you apply example data file?
Great video
Thanks very much
Is it possible to do this with a Non-parametric anova and a Dunn’s test posthoc? Standing by
Thanks
thank a lot a beatifull skills from beatifull Lady!
Thank you. Very helpful
Glad it was helpful!
Thank you
muito bem explicado
Thank you very much !!!
Glad it helped!
Interesting. Could you demonstrate it from the raw data? dip? vjust?
Beautiful. Thank you
Hi Rosane,
been following closely but i somehow cant go past this error
Error in UseMethod("group_by") :
no applicable method for 'group_by' applied to an object of class "character"
i have reached the Tk stage.
Thanks
what can I do if I have several continuous variables? The letters don't sort themselves accordingly since they are being sorted out for each variable's mean instead of the treatments.
Certainly a great video!!!! However, I'm facing some problems with plot generation. At the end of line 39 you introduce 'y=quant', what is this? When I run the function for plot, it's generated an error 'quant object not found'. I would appreciate information about it. Thanks beforehand
Mam, you are amazing
Perfect! How about adding significant values to a faceted Boxplot
Great video and lesson. In which rstudio version does the multcompView package exist?
I believe you can install the multcompView package in any of the recent versions of R.
@@RosaneRech th-cam.com/video/c1Hs1v61lhw/w-d-xo.html
Love the accent and explanation.
Thank you! 😃
Hi, interesting tutorial. I'm sorry how can I understand the letters? I mean it's been a while since my last class for statistics. But I got significant differences come up from p-value, right? How can this be related to those letters? Thanks!
Hi Israel. Yes, the letters come from the p-value and follow two simple rules:
- the highest mean receives the letter "a"
- means that have no significant difference receive the same letter.
You can take a look at this tutorial: th-cam.com/video/gHSe1KFTzD0/w-d-xo.html
Tengo como errror " Error in fortify(data) : object 'Tk' not found" agradeceria su ayuda
great video but my cld didnt appear in the table after i run the "print(tk)" :(
What if I have produced 50+ ANOVA boxplots, using GGBOXPLOT() and now I just need to add the CLD? Can I add CLD to ggboxplot? I would prefer to just go into my code and build cld/tk tables and apply those labels to my existing plot. I was able to follow along with this tutorial making a new boxplot from my dataset using this method. Great video, the best R tutorial I have seen online to date.
Thanks! I believe you can add the geom_text() to the ggboxplot(). You just need the table with the treatments and correspondent letters.
Best tip
Happy to help
Hi
I got the following error on the last line of code....Genotype is my x axis , everything worked perfectly, till the end...Could you give me some advice?
Don't know how to automatically pick scale for object of type data.frame. Defaulting to continuous.
Error in FUN(X[[i]], ...) : object 'Genotype' not found
Thanks, the video was great!!
Hi Ferga, it is hard to debug the error without the code. Check if your x-axis - genotype - is defined as factor.
How to make boxplot of three factor experiment ?
I am trying to add the letters but my R seems not to be adding them?
How can I organize my data on my excel table?
Don't know how to automatically pick scale for object of type data.frame. Defaulting to continuous.
Error: Aesthetics must be either length 1 or the same as the data (4): label
Run `rlang::last_error()` to see where the error occurred
plz resolve this error. i got this in last line
Hai it is very helpful video. I need small clarification...
When I changes axis from X to Y and Y to X, the geom_boxplot (aes( fill = factor (..middle..)) argument is not functioning and I got an Error code showing object middle is not found.
Please help me to fix the issue.
Is it working without the `aes( fill = factor (..middle..)`?
@@RosaneRech Yes, it is working.
I would have to take a look on your code to figure out what is happening.
I have just published the tutorial on my website, where you can copy the code to reproduce the tutorial.
statdoe.com/one-way-anova-and-box-plot-in-r/
I hope it helps you in finding the error.
@@RosaneRech Will follow madam
This does not work with my dataset unfortunately
Thanks a lot! This tutorial is easy to follow
I got this Error in FUN(X[[i]], ...) : object 'quant' not found. Can you help me to solve this issue???
Me too
Hello, check in your Tk data if there is indeed a column called "quant". If not, check your code in the summarise function.
You can find the copy de code for this tutorial at: rpubs.com/RosaneRech/OneFactorBoxplot
Hello, check in your Tk data if there is indeed a column called "quant". If not, check your code in the summarise function.
You can find the copy de code for this tutorial at: rpubs.com/RosaneRech/OneFactorBoxplot
@@RosaneRech Thank you very much !!!
Será que ela é francesa?
Não sou francesa :)
Certo.
Thank you, excellent video very helpful .
Glad it was helpful!