Graphical representations of proteins in VMD

[@bassantmoustapha8145]

great tutorial, thanks!

[@suniltimilsina6306]

Thanks alot.

[@Mohamedshehata]

You are welcome !

[@12345Adekunle]

Good job 💯💯💯

[@Mohamedshehata]

Thank Teslim

[@paybackgaming7849]

How to do this using tcl console ?
I mean color a specific atom or a residue using tcl

[@mayankmahajan7173]

How to work with a single chain and its constitents as we can select a particular chain of a molecule but can not leave components of other chain like residue so how to remove those components?

[@mni79]

thanks

[@Mohamedshehata]

Good luck

[@yashikagirdhar]

sir how to remove ligand from protein?

[@Mohamedshehata]

delete from the pdb file

[@sinhasuman1944]

Hi, great tutorial, thanks for that.
Please let us know if it's possible to colour only the the carbon atoms differently in vmd when two drug molecules are present in the structure..the non carbon atoms can have similar colour patters, eg red for oxygen and blue for nitrogen etc. as done conventionally.
Similarly, is it possible custom colour different parts (by parts i mean according to residue sequence eg. aa233 to 244 in red and 255 to 266 in white) of the same alpha-helix differently?
Sorry for the lengthy questions, hope you don't mind. Thanks for your patience.

[@Mohamedshehata]

Hi, this is video is just to give a basic idea of the logic behind the graphical representation of VMD . What you ask can be done easily if you checked VMD official tutorial ..Good luck