PyRX ligand docking tutorial

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  • เผยแพร่เมื่อ 16 พ.ย. 2024

ความคิดเห็น • 34

  • @TheWysele
    @TheWysele 5 ปีที่แล้ว

    Thank you so much, dear sir, for this awesome tutorial. I am only beginning my PhD and your video helps me getting started.

  • @yhoff76
    @yhoff76 7 ปีที่แล้ว +1

    Awesome tutorial, it worked down to the letter!! I used TextWrangler and Numbers but achieved the same results, thank you sir.

  • @lyra88
    @lyra88 7 ปีที่แล้ว +2

    Best PyRx tutorial I've found yet, thank you!

  • @starrchoc
    @starrchoc 3 ปีที่แล้ว

    Thank you so much for this tutorial. It's so clear and easy to understand. I really need this tutorial to do my research. Once again, thank you so much for the help!

  • @Rome532
    @Rome532 4 ปีที่แล้ว

    Professor are you sure autock vina is autonomous coordinate x,y, z 25 ?
    For me it is important for my research
    I am looking forward to reply

  • @RakeshBhowmick
    @RakeshBhowmick 5 ปีที่แล้ว

    Excellent tutorial. Sir, please make a video on molecular simulation of protein ligand interaction using Gromacs

  • @spradeep5889
    @spradeep5889 4 ปีที่แล้ว

    Is the grid box generated is auto is it necessary to change grid box size.

  • @SarkisDallakian
    @SarkisDallakian 8 ปีที่แล้ว +2

    Thank you for this tutorial. Much appreciated and liked!

  • @sanjanabhagat1822
    @sanjanabhagat1822 4 ปีที่แล้ว

    Hello ,i wanted to know while performing vina through pyrx ,the grid is automatically predicted or we have to set it ,as in pyrx the grid is itself set at the centre ...plz help me in this

  • @mixtureofmedia
    @mixtureofmedia 2 ปีที่แล้ว

    Finally, no Indian accent bioinformatics tutorial .
    Thanks for sharing i can share this video with Undergraduate students.

  • @anandarup-bnk
    @anandarup-bnk 6 ปีที่แล้ว +1

    This is a wonderful tutorial. Thanks a lot.

  • @mssakib5421
    @mssakib5421 8 ปีที่แล้ว +1

    Great video! Could you please tell which PyRx version you used in this tutorial?

    • @proteincharacterization4438
      @proteincharacterization4438  7 ปีที่แล้ว +1

      I think it was 0.9

    • @Rome532
      @Rome532 4 ปีที่แล้ว

      Protein Characterization hy professor I have a question in the pyrx tutorial are you sure auto dock Cina wizard is automatically with coordinate x,y, z 25,25,25 ? For me is important this step
      Is it autonomous good to find right value affinity energy ?
      Thanks a lot I am looking forward to replay as soon as possible

  • @agniruudrrasinha7946
    @agniruudrrasinha7946 3 ปีที่แล้ว

    When I try to download the ligand summary report , I cant find the excell option, only csv.

  • @mibrh3751
    @mibrh3751 4 ปีที่แล้ว +1

    great video! I wanted to know why the following steps were skipped: removing water, adding hydrogens, merging non-polar hydrogens, and adding partial charges? I'm not familiar with PyRx

    • @Alchemist4U
      @Alchemist4U 4 ปีที่แล้ว

      I am also looking for these answers

  • @ProfessorBeuBenz
    @ProfessorBeuBenz 5 ปีที่แล้ว

    what if I want to dock novel derivative which I have designed?

  • @nitishchauhan5511
    @nitishchauhan5511 4 ปีที่แล้ว

    Hello,
    I have doubt that the free version of PyRx software is sufficient for publishing the docking studies.

  • @snehaagarwal7995
    @snehaagarwal7995 3 ปีที่แล้ว

    M facing error while converting my protein to macromolecule( pdb id 4UTC)

  • @selenahataye2544
    @selenahataye2544 6 ปีที่แล้ว

    how did you get promol onto your Mac? I can't open an exe file and the zip file won't download the software.

  • @DrLHKamble
    @DrLHKamble 6 ปีที่แล้ว +1

    Great work.

  • @hannahadeyeyeadebisi4611
    @hannahadeyeyeadebisi4611 3 หลายเดือนก่อน

    Hi there’s no Ec number of 2HNT on my computer

  • @mni79
    @mni79 4 ปีที่แล้ว

    good work

  • @nyashamuzariri2522
    @nyashamuzariri2522 6 ปีที่แล้ว +1

    Very useful thank you

  • @hansc.ferreryulfo4599
    @hansc.ferreryulfo4599 7 ปีที่แล้ว +1

    Thanks!! Very useful!

  • @MrRutash
    @MrRutash 6 ปีที่แล้ว

    much needed ..i liked it very much...

  • @yurikomartinez2533
    @yurikomartinez2533 3 ปีที่แล้ว

    thank you very much!

  • @sabaiftkhar4270
    @sabaiftkhar4270 7 ปีที่แล้ว

    thank you. great tutorial

  • @nitishchauhan960
    @nitishchauhan960 4 ปีที่แล้ว

    Hii Dear, I am not getting any option to download ligand summary file in excel form.

    • @mel7658
      @mel7658 3 ปีที่แล้ว

      @Rao Zubair Khaliq i didnt find the ligand from pdb i need a help plz

  • @syarifuddinhusain1874
    @syarifuddinhusain1874 7 ปีที่แล้ว

    why its says ive downloaded 0 files?

  • @camilabastosnunes9438
    @camilabastosnunes9438 5 ปีที่แล้ว

    love