You can separate them by using PyMol. Before starting analysis open protein file in PyMol, then open ligand pdb file (having all conformations). After that, select best mod and export this complex in pdb format from file -> export molecule. Hopefully you will have single ligand
When I run the "autodock4", I get the following error autodock4: FATAL ERROR: ERROR: 4631 records read in, but only dimensioned for 2048. Change "MAX_RECORDS" in "constants.h". autodock4: Unsuccessful Completion. After changing records in constants.h, how to compile further ? thank you
Hi, I have a issue. I'm not able to get docking results as it show error like, FATAL ERROR: ERROR: 3778 records read in, but only dimensioned for 2048. Change "MAX_RECORDS" in "constants.h". Can u please suggest how to rectify this error ?
Hey thanks so much for this! First video I find that actually goes to the point of this!
Really thank you so much brother 2 week search my qst ans finally am got your video
Thanks heaps!
Hiii subscribed
sir, when I click on show interaction it is not showing the image. pls help
please define ligand
Ligand is stigmasterol
Protein is corona virus spike protein (PDB ID 6MOJ)
Sir..can you tell me how can we find coodinates 😕😕😕😕😕m?
Sir ligand and protein are separated when i upload ligand.pdb in pymol, wht to do?
same problem faced
Sir, even after following each step I'm getting a clustered ligand instead of a single distinguishable one. Can't understand what went wrong.
You can separate them by using PyMol. Before starting analysis open protein file in PyMol, then open ligand pdb file (having all conformations). After that, select best mod and export this complex in pdb format from file -> export molecule. Hopefully you will have single ligand
Sir aapka email id deejiye please
nasiriqbal0084@gmail.com
When I run the "autodock4", I get the following error
autodock4: FATAL ERROR: ERROR: 4631 records read in, but only dimensioned for 2048.
Change "MAX_RECORDS" in "constants.h".
autodock4: Unsuccessful Completion.
After changing records in constants.h, how to compile further ?
thank you
Hi, I have a issue. I'm not able to get docking results as it show error like, FATAL ERROR: ERROR: 3778 records read in, but only dimensioned for 2048.
Change "MAX_RECORDS" in "constants.h".
Can u please suggest how to rectify this error ?
very helpful video. Thank you so much. Kindly also make a tutorial on calculation of RMSD for docking analysis.
I like how short and detailed the video is!! Very helpful. Thanks!
Thank you very much for sharing your knowledge! I learning a lot!
Sir i m follow the same steps but sir where is the data means which am i publised in research paper.
And please how can I do to extract the table of results ...
wonderful explanation sir! :)
That is great job man, just keep going please...
How to get the information
Thank you
Sir bond length is measured in ?? Angstrom or nm
Å
Awesome 👏🏼