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Diffusion Imaging in Python - DIPY
เข้าร่วมเมื่อ 21 ก.ค. 2016
This is the official TH-cam channel of Diffusion Imaging in Python (DIPY) hosted at dipy.org
DIPY is a free and open source software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging (dMRI) analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities. Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging.
DIPY is a free and open source software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging (dMRI) analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities. Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging.
Global Neuroimaging Studies with Diffusion Tractometry and Generative AI
Join Professor Paul Thompson from the University of Southern California for an insightful talk on how diffusion MRI and generative AI are revolutionizing neuroimaging research. Discover groundbreaking insights into brain disorders like Parkinson's disease, major depression, bipolar disorder, epilepsy, schizophrenia, and ADHD through the study of over 100,000 individuals across 45 countries 🌍.
This presentation provides an in-depth look at the structural impacts of 33 major disorders on the brain and explores how genetic variation plays a role. Whether you're a researcher or simply curious about neuroscience, this talk offers valuable perspectives on the latest advancements in brain imaging.
New to diffusion MRI or tractometry? Start your journey with our beginner-friendly resources! 🚀 Dive into brain data analysis with our Python-based tutorials, powered by DIPY, an open-source imaging library offering all the tools you need to get started.
📌 Don’t forget to like, comment, and subscribe for more expert insights on brain analysis with diffusion MRI!
Stay connected with us on social media:
- Twitter: x.com/dipymri
- LinkedIn: www.linkedin.com/company/dipy
- GitHub: github.com/dipy
- Website: dipy.org/
This presentation provides an in-depth look at the structural impacts of 33 major disorders on the brain and explores how genetic variation plays a role. Whether you're a researcher or simply curious about neuroscience, this talk offers valuable perspectives on the latest advancements in brain imaging.
New to diffusion MRI or tractometry? Start your journey with our beginner-friendly resources! 🚀 Dive into brain data analysis with our Python-based tutorials, powered by DIPY, an open-source imaging library offering all the tools you need to get started.
📌 Don’t forget to like, comment, and subscribe for more expert insights on brain analysis with diffusion MRI!
Stay connected with us on social media:
- Twitter: x.com/dipymri
- LinkedIn: www.linkedin.com/company/dipy
- GitHub: github.com/dipy
- Website: dipy.org/
มุมมอง: 137
วีดีโอ
Building and Exploring the Human Reference Atlas with Virtual Reality - Andreas Bueckle
มุมมอง 79หลายเดือนก่อน
Keynote on "Building and Exploring the Human Reference Atlas with Virtual Reality" by Andreas Bueckle at the DIPY Workshop 2024. Explore how VR is transforming 3D anatomical models, integrating spatial and biological data for advanced biomedical research. Learn about cutting-edge VR applications in anatomy, cell types, and tissue mapping. Links: HRA Portal: humanatlas.io VR Demo: www.meta.com/e...
[Linux] DIPY Installation
มุมมอง 1128 หลายเดือนก่อน
This Video is a short tutorial on how to install DIPY on Linux. Feel free to share your questions on DIPY Github Please cite: Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I and Dipy Contributors (2014). DIPY, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, vol.8, no.8. To install: pip install -U dipy conda install -c ...
Fetch DIPY dMRI Datasets
มุมมอง 1358 หลายเดือนก่อน
This short Tutorial shows you how to fetch some diffusion imaging dataset from DIPY. Please cite: Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I and Dipy Contributors (2014). DIPY, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, vol.8, no.8. To install: pip install -U dipy conda install -c conda-forge dipy To ask ques...
[Windows] DIPY Installation
มุมมอง 1658 หลายเดือนก่อน
This Video is a short tutorial on how to install DIPY on Windows. Feel free to share your questions on DIPY Github Please cite: Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I and Dipy Contributors (2014). DIPY, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, vol.8, no.8. To install: pip install -U dipy conda install -...
[macOS] DIPY Installation
มุมมอง 1288 หลายเดือนก่อน
This short tutorial explain you how to install DIPY in a macOS Please cite: Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I and Dipy Contributors (2014). DIPY, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, vol.8, no.8. To install: pip install -U dipy conda install -c conda-forge dipy To ask questions, there is a foru...
DIPY Workshop 2024 - March 11-15
มุมมอง 3068 หลายเดือนก่อน
This is a short summary of the upcoming DIPY Workshop 2024. Online Edition. March 11-15. Register at workshop.dipy.org
Spherical harmonic-based reconstruction
มุมมอง 1.9K2 ปีที่แล้ว
Spherical harmonic-based reconstruction
Focus on Q-Space Trajectory Imaging (QTI) - part 3 - Correlation Tensor Imaging
มุมมอง 1902 ปีที่แล้ว
Focus on Q-Space Trajectory Imaging (QTI) - part 3 - Correlation Tensor Imaging
Matrix Sketching for Patch2Self - Part 3
มุมมอง 2372 ปีที่แล้ว
This video explains matrix sketching and how it is used for Patch2Self to speed up regression, implicitly reducing memory footprint. For more details, please refer to: Fadnavis, S., et. al. “Patch2Self denoising of Diffusion MRI with Self-Supervision and Matrix Sketching”, BiorXiv, 2022 www.biorxiv.org/content/10.1101/2022.03.15.484539v1 More information on: dipy.org or dipy.org/workshops/dipy-...
Noise Uncertainty Quantification (NUQ) Metric - Part 4
มุมมอง 2002 ปีที่แล้ว
This video explains a new metric to evaluate denoising performance on Diffusion MRI data using Uncertainty Quantification. To learn more, please refer to: Fadnavis, Shreyas, et al. "NUQ: A Noise Metric for Diffusion MRI via Uncertainty Discrepancy Quantification." arXiv preprint arXiv:2203.01921 (2022). arxiv.org/abs/2203.01921 More information on: dipy.org or dipy.org/workshops/dipy-workshop-2...
Brain Extraction using V-Net and CRF layers
มุมมอง 4492 ปีที่แล้ว
This video explains the using V-Net with Conditional Random Field to do brain extraction in T1 modalities. More information on: dipy.org or dipy.org/workshops/dipy-workshop-2022 Please cite: Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I and Dipy Contributors (2014). DIPY, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatic...
Diffusion Kurtosis Imaging (DKI) - Practice
มุมมอง 6422 ปีที่แล้ว
Talk by Dr. Henriques of the Champalimaud Center of Unknown, Portugal. Synopsis Dr. Henriques will explain Kurtosis Imaging methods available in DIPY. Dr. Henriques is the lead contributor to all Kurtosis-related projects in DIPY. More information on: dipy.org or dipy.org/workshops/dipy-workshop-2022 Please cite: Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimm...
Introduction and Welcome
มุมมอง 1.8K2 ปีที่แล้ว
Talk by Prof. Garyfallidis of Indiana University, Department of Intelligent Systems Engineering. Garyfallidis is the Workshop Chair, Founder, and Lead DIPY developer. Synopsis Garyfallidis will clarify important points about DIPY and this workshop that the attendees should know. To follow the installation instructions make sure you have a recent Anaconda version installed. More information on: ...
Patch2Self Denoising of Diffusion MRI - Part 2
มุมมอง 5352 ปีที่แล้ว
Explains the Patch2Self denoising approach in detail with practical implementation in DIPY. Refer to: Fadnavis, Shreyas, Joshua Batson, and Eleftherios Garyfallidis. "Patch2Self: Denoising Diffusion MRI with Self-Supervised Learning." Advances in Neural Information Processing Systems 33 (2020): 16293-16303. proceedings.neurips.cc/paper/2020/file/bc047286b224b7bfa73d4cb02de1238d-Paper.pdf More ...
Focus on Q-Space Trajectory Imaging (QTI) - part1
มุมมอง 3772 ปีที่แล้ว
Talk by Dr. Kerkela of University College London, United Kingdom and Dr. Henriques of the Champalimaud Center of the Unknown, Portugal. Synopsis Q-space Trajectory Imaging is a new imaging method that was invented by Prof. Carl-Fredrik Westin. The novel methods explore the power of time-varying gradients that probe trajectories in q-space, which is termed “q-space trajectory imaging” (QTI). QTI...
Introduction to computational neuroanatomy
มุมมอง 1.4K2 ปีที่แล้ว
Talk by Dr. Wei Tang of Indiana University, Department of Computer Science. Synopsis Dr. Tang will explain the basic terminology that we will be using during the workshop and its connection to the actual neuroanatomy. Dr. Tang is an expert in monkey and human brain anatomy and data analysis. More information on: dipy.org or dipy.org/workshops/dipy-workshop-2022 Please cite: Garyfallidis E, Bret...
Focus on Q-Space Trajectory Imaging (QTI) - part 2 - Practise
มุมมอง 1472 ปีที่แล้ว
Focus on Q-Space Trajectory Imaging (QTI) - part 2 - Practise
Data driven interference in diffusion MRI: DL harmonization of quantitative brain biomarkers
มุมมอง 5092 ปีที่แล้ว
Data driven interference in diffusion MRI: DL harmonization of quantitative brain biomarkers
Challenges in diffusion MRI tractography
มุมมอง 2682 ปีที่แล้ว
Challenges in diffusion MRI tractography
Image Registration - Part 2 - Affine Registration and motion correction
มุมมอง 1.7K2 ปีที่แล้ว
Image Registration - Part 2 - Affine Registration and motion correction
BundleWarp, streamline-based nonlinear registration of white matter tracts
มุมมอง 1062 ปีที่แล้ว
BundleWarp, streamline-based nonlinear registration of white matter tracts
In Paris now for spring break. Will try to get online as much as I can.
is there any videos from the workshop ?
lose the music