![Shidiq Nur Hidayat](/img/default-banner.jpg)
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- 19 022
Shidiq Nur Hidayat
เข้าร่วมเมื่อ 10 ต.ค. 2011
TOR-C Analysis App v1 (beta) - with Shiny - R programming
TOR-C Analysis App v1 (beta) - with Shiny - R programming
PCA and LDA analysis of multivariate data
PCA and LDA analysis of multivariate data
มุมมอง: 118
วีดีโอ
Tutorial DiameterJ - diameter size of nanofiber
มุมมอง 19K6 ปีที่แล้ว
Tutorial using diameterJ to calculate diameter size of nanofiber and plot diameter histogram using originLab
ORREGA TOUR 2016
มุมมอง 567 ปีที่แล้ว
Jalan-jalan karang taruna Dusun Sedogan, 31 Oktober 2016, Drini dan Sadranan, Wonosari, Indonesia
SIFU2013-UGM (intro)
มุมมอง 898 ปีที่แล้ว
S2 Ilmu Fisika Universitas Gadjah Mada 2013 Dari Jogja untuk Dunia... :) template by: www.ravenprodesign.com/
Hi! Anyone know how to solve this? It works with the output "All Images Segmented Successfully in: 0.007 Seconds" but no processed images are saved. Do you have any idea about it?
Hi, the tutorial website for diameterj appears to be down. Is there anywhere else I can see the official training tutorial? is it archived somewhere?
@jordanrobinson690 Hi, did you find it?
@@Nick-fn8gz no, but I’ve been figuring it out on my own, thanks!
@@jordanrobinson690 Oh got it, do you know the difference between the super Pixel and histogram fiber diameter measurements? or which one is the best to consider?
Hello. Im student of fashion designer but it's not things that I want. I want to learn making intelligence fabric. Like nanofiber. Can you please guide me how to enter this area and start watching the tutorial? What resources should I use?
Didn't work in 2022.
Please tell where TO FIND tor-c analysis tool?
Anyone succussed by following this tutorial in 2021? I tried on my laptop (macOS Big Sur system) and my friend's laptop (windows system). Unfortunately, none of them works.
Can we change the unit like from mm to nm in set sclae option
Some time has passed since you asked but the answer is yes
When I click DiameterJ Segment, it rise Unsupported format or file not found, how to fix this? My imageJ version is v1.53e and DiameterJ version is 1-018. THANK YOU!!!
I got the same problem. All of my operations are the same as the video, but nothing came after segmentation
Dear Shidiq, Thanks a lot for the wonderful video. I have been trying your methods but unable to get results generated after orientation analysis. I guess this may be due to the software issues from latest versions. I am using windows 10 now. It will be really helpful if you can send me your imagej package with diameterJ plugin to me via drive. This is my email - vhpolyhk@gmail.com
Thank you, actually it just part of my task in class. I need to check my old laptop, but you can try using this plugin: imagej.net/_images/c/cc/DiameterJ_1-018.zip (I remember using this plugin).
@@ShidiqHidayat Thank you very much again for sharing this link. I have tried this plugin but the problem persists. I think this is because the plugin is not yet updated to work with the current versions of imageJ. I believe that you might have used a different version of imageJ that might be suitable for this plugin. I humbly request you to share your package from your old laptop if possible. I will never forget your help.
@@harunv6599 Please download my copied ImageJ (with DiameterJ plugin): www.dropbox.com/s/o65ud6e713n6aml/ImageJ_DiameterJ.zip?dl=0 I used ImageJ 1.5.0 and DiameterJ 1.018 and rerun smoothly with the same SEM image on the newest Windows 10 20H2 (64bit) with newest JRE. ImageJ 1.5.0: wsr.imagej.net/distros/win/ DiamterJ: imagej.net/_images/c/cc/DiameterJ_1-018.zip
@@ShidiqHidayat Dear Shidiq, Finally it works. Thanks a lot for timely help. Wishing you great success. Thanks again.
I have a question. Is the output from the files called XX.Radius.Histo.csv already in the converted unit (in this case micrometer)?? Because in the official training it is said it is in pixel but to me it seems that is already converted in micrometer.
Yes, but you must set up pixel to micrometer in imageJ (from scaling line SEM image information)
Terimakasih video tutorialnya mas. Btw saya ada masalah... kalau muncul seperti ini : MinError(I): NaN, not converging. Try 'Ignore black/white' options bisa diapakan ya? saya coba atur ignore black&white di images>adjust>auto threshold, tetap keluar seperti itu.
Thanks for the video, Does length refer to fibers diamater? What is TOR-C that you used to get fibers radius?
Hi! I’m new to DiameterJ and was wondering if these frequency values are accurate? For some of my nanofiber images I can count maybe 10-20 fibers but then excel will bring up frequencies in the thousands?
Maybe you must set up or calibrate pixel to micrometer from scaling line SEM image. Sorry for late answer.
thank you for the video. I have a problem when I'm working with this, in segmentation step, in "log" box this error appears: MinError(I): not converging. Try 'Ignore black/white' options what should I do for this? the number of segmented pictures is less than what I see in video!
same problem here
Thanks. It's works fine
Where did you get the Software?
It's initial version, I made it using R shiny
@@ShidiqHidayat How do we get it? I have fibers I want to analyze and I want to follow the steps in your video to obtain the same Histogram. I can get Origin Pro but missing your TOR-C app
@@Sanellh It just simple program to call R script that convert binding frequency data to unbin data, like this: --------------------------------------------- dataset <- read.table(file = '2_M1_Radius Histo.csv', header = TRUE, sep = ',') head(dataset) M <- dim(dataset) M unbin <- data.frame() for (i in 1:M[1]){ temp <- rep(dataset[i, 1], dataset[i, 2]) unbin <- c(unbin, temp) } unbin <- as.data.frame(unbin) unbin <- as.data.frame(t(unbin)) #unbin <- as.matrix(unbin) write.csv(unbin, file = 'unbin.csv', row.names = FALSE)
you also can use other program language
@@ShidiqHidayat please can you give me the script of this programme with shiny
Mas harus pakai torC untuk ploting di originnya? Kalau cuma Radius dan frekuensi belum di olah dalam TorC. Bagaimana?
tidak harus, itu program yg tugasnya untuk mengubah frekuensi bin ke nilai asli... misal, nilai x ada n buah, menjadi x, x, x, ..., x(n) bisa dicoba di origin, yang input langsung berupa radius dan frekuensi, kenapa pakai metode itu, karena pengen plot manual, bisa memilih lebar bin histogramnya, kalau langsung gak bisa milih, atau mungkin saya yg belom tau
Thank you for taking the time to make the video. Just a point to note, the diameter J plugin has a full training tutorial that you can get access to if you register with a valid email address. They will send you a numeric code that you need to access the training modules. The training looks like a quiz but you do not have to do that. The part you need to look at is the document hyperlink they refer to in each training (quiz) module. The document covers all the necessary steps on how you can use the plugin. The instructions are well laid out with images of each step.
Thank you very much for your kind information
No problem. By the way, this is the link to the training i was referring to: sites.google.com/site/diameterj/home
Hi @@ShidiqHidayat , to your knowledge, is there a similar video for using diameter J in 2022?
@bilalsaeedahmad6616 Do you still have the tutorial? Online is not available
Where can I find the TOR-C program?
basically it's just a launcher program to launch the R script that can change the histogram data (bin data) to unbin frequency data. You can use any program language to do that. Example: radius 2 nm have 10 frequency, it become 2,2,2,2,...2 (10 times)