0:00 Intro + Installation of Layout Algorithms and STRING App 2:37 Insert 68 genes in STRING plugin in CytoScape 4:33 Style and annotation of the network 13:18 Export network to image Great tutorial, thanks so much BB!
Thank you sir, after generating graph,should I focus on the hub genes for the writing discussion or should I go for gene ontology enrichment for total differentially expressed genes for discussion writing
Can i open the pdf file in photoshop editation because in postsdcript file some time i saw some parts are missing there. I want to kno one thing, some web tools gives file format in PNG or JPG .So if i reshape the PNG or JPG file with photoshp like this tutorial,so will my PNG or JPG gises the figure like this???
helped a lot for a smooth start. I tried to customize my protein node size according to their score(confidence ) but I could not find the score option in the mapping column under the option "column" . Can you please suggest me in this issue?
hi, i have a question, i have nitrogen and carbon genes, then i want to check relation with different mine treatments, but you did not add any values of genes, becuase my results have values of every gene in every treatment
0:00 Intro + Installation of Layout Algorithms and STRING App
2:37 Insert 68 genes in STRING plugin in CytoScape
4:33 Style and annotation of the network
13:18 Export network to image
Great tutorial, thanks so much BB!
Thanks for that!
Thank you so much for that wonderful explanation. The energizing music add on to its liveliness.
Glad you enjoyed it!
Thanks for posting such helpful video
Thank you for such a nice explanation. How would I generate the color of these genes based on Ontology in Cytoscape?
Thanks so much sir for your helpful video.
video is really valuable for beginners. Do you have any video on Circos plots as wel. thanks!
Ur welcome... Yes, i am preparing some videos on R Beginners, u will also see circos tutorial in R.. soon...
Thank you sir, after generating graph,should I focus on the hub genes for the writing discussion or should I go for gene ontology enrichment for total differentially expressed genes for discussion writing
Sir, please make a video for a large network such as more than 300 proteins. I'm practicing it, but it becomes a mess when our datasets are large
Amazing..
Thanks
Good, good
Thank's really helpful.
Can i open the pdf file in photoshop editation because in postsdcript file some time i saw some parts are missing there. I want to kno one thing, some web tools gives file format in PNG or JPG .So if i reshape the PNG or JPG file with photoshp like this tutorial,so will my PNG or JPG gises the figure like this???
Hi i analyzed my PPI netwrok by clustalviz which is cytoscape plugin.Here the results came by rank.So now i am confused which one i should pick.
hello sir, can show also show a step by step video of how to make a hub gens-TF-miRNA network in cytoscape?
Thanks, It's really helpful. Could you please create a video about Protein Ligand interaction? It would be better to understand for me.
can you help me if you understood how protein and ligand interaction network happens
helped a lot for a smooth start. I tried to customize my protein node size according to their score(confidence ) but I could not find the score option in the mapping column under the option "column" . Can you please suggest me in this issue?
I have the same issue.
generate plot from statistics is missing from NetworkAnalyzer in newer version
how do i do network modelling for target proteins and ligands interaction?
hi, i have a question, i have nitrogen and carbon genes, then i want to check relation with different mine treatments, but you did not add any values of genes, becuase my results have values of every gene in every treatment
can I know how I want to get contact to you, besause there is confius part occuried in my protein-protein interaction
please reduce music on your next videos, it's distracts
Thanks u for you suggestion, we removed the music in our recent videos..
hi, i have problem viewing the file after save it as .ps file. why?
Yeah me too..could not open the file
The presentation is very good.. but the music is so distracting.
Can someone help me with large networks images in cytoscape.
Thanks!!!!
Welcome!
The music is super annoying! Thanks for sharing though.
Can you please stop the background music
Music is alittle distracting-feel like listening to music than your voice.Thanks
Kuhlman Village
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