Permutation Hypothesis Test in R with Examples | R Tutorial 4.6 | MarinStatsLectures
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- เผยแพร่เมื่อ 30 ม.ค. 2025
- Permutation Hypothesis Test in R with Examples: Learn how to conduct a permutation hypothesis test in R programming language using RStudio, Step by Step with no package. 📝 Free R Script and extra material for Practice: bit.ly/30097VA 👉🏼Related: Permutation Hypothesis Test in Statistics Video (bit.ly/2E0BOZ9); Bootstrapping in Statistics and in R Videos: (bit.ly/2GL6AYS ) ;
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In this R video tutorial, we show how to do a permutation hypothesis test in R, using an example where we would like to compare a numeric (quantitative, continuous) variable for two groups formed by a categorical variable (qualitative, factor). A permutation test is considered an “exact” test, as it calculates an exact p value (although in practice, we often take a random sample of all possible permutations, and so it is no longer truly an exact test)
A permutation test in statistics starts by assuming a null hypothesis to be true, and then considers all possible permutations of the data, under the assumption that the null is true. The p value is then calculated as the percentage of test statistics, calculated for each of the permutation data sets, that are greater than the observed (or sample) test-statistic.
In this R video, we show how to implement such a test in R statistical software. We make the R code as transparent as possible, and include some extra R code to explore at the end of the R script for the video.
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👋🏼 Hello there! In this R statistics video we learn how to use R (and RStudio) to do a permutation hypothesis test following an example where we compare a numeric variable for two categorical/qualitative variable. In another video we explain the concept of permutation test in statistics (bit.ly/2E0BOZ9); There is also an awesome R Script available for those of you who like to learn by doing with some extra material for keen learners! (bit.ly/2E0BOZ9) If Like to support us you can Donate (bit.ly/2CWxnP2), Share our Videos, Leave us a Comment and Give us a Like 👍🏼 ! Either way We Thank You!
honestly the best stats videos ive come across on youtube, cannot say thank you enough!!
These videos and R script/tutorial are really great and I watched a lot of them, Marin is very clear and seem to follow people mind when he explains complicated concepts, many thanks !
These videos are fantastic! You explain the concepts so clearly and concisely and then back that up with some excellent well commented code. You guys rock!
thanks, we appreciate that!
I love how you explain things.
you the man!
thank you for the great video! reviewing the video, I was wondering why did you take the absolute value of the mean difference? When calculating the difference of two-sided hypothetical tests, absolute values would not fit into the hypothetical test... Am I right??
Hi! What is the difference between a permutation test and a Kruskal test for the analysis of an ordinal dependent variable?
can you explain more about setting the seed. As in i understand why we set the seed and what the function does, but I dont understand the number in the brackets
Thanks for an amazing video! I still have confusion about this topic. My understanding is that if you reject the null hypothesis(say when alpha=0.05) you could conclude with alternative hypothesis being true since in statistical sense having p-value of 4% says that observed result has 4%chance of happening by random chance therefore there must be a difference between two groups(alternative).
However not fully understanding why "fail to reject Null" does not allow you to conclude that Null is True. Is there a way to conclude with Null is true? My goal is to prove that two different groups actually comes from same distribution(have same mean).
This video is really good, and does a great job of explaining permutation tests at a base level. I have a question though, for larger datasets with multiple variables it can often be beneficial to perform a t-test on each column (such as with the colttests() function), and in cases where you would want a permutation test you may want to do so for all columns. Do you know of a good method to do that, cause right now I generally have to manually run a permutation t-test one column/variable at a time.
Thanks. To do that you can use the apply() function to apply a permutation test to columns. You can either write a permutation test function yourself or you can find a package with a perm test function that you can then apply to the columns. The apply function is essentially a more efficient version of a loop
@@marinstatlectures thanks! I'll try doing that.
Can we use COIN package here?
How can we do the Welch test in this example ?
infer package makes this easier
That is true. But there is value in learning how to code certain things yourself, so that you are able to build or adapt what you need to
@@marinstatlectures You're right! This comment was for people that learned the hard way and now want to make it easier, so to speak.