288 - Nuclei segmentation using StarDist and tracking using Trackpy in python

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  • เผยแพร่เมื่อ 23 ธ.ค. 2024

ความคิดเห็น • 21

  • @ajay0909
    @ajay0909 2 ปีที่แล้ว

    Just making a habit of liking your video at the very start as i always forget to like your video because of the details you fill in it. Thanks for the content sir

  • @y.shrestha6936
    @y.shrestha6936 2 ปีที่แล้ว

    Another excellent presentation! I would not have known about these libraries on my own. Another set of tools to add to the toolbox. Stardist would have probably outperformed my half baked Hough transform based algorithm on a previous project.

    • @DigitalSreeni
      @DigitalSreeni  2 ปีที่แล้ว

      Thank you very much for your generosity. And yes, there are a lot of libraries that are useful and actively maintained. I learn about them from talking to many people in the image processing community.

  • @tmacnba-eg8er
    @tmacnba-eg8er 2 ปีที่แล้ว +2

    sir please make a video about nnunet usage for costum dataset on colab..

  • @ivan2221
    @ivan2221 2 ปีที่แล้ว +2

    Another great lesson! Your channel is one of those things that make internet worth. Thanks! Im currently in a project using label studio for multiclass segmantion and Im having a hard time on how could I stack the masks of a given image into a single png. Do you have any specifics on that in your channel (couldn't find) or to provide any tip? I think data preparation is one of the most important and complex part of the process.

    • @DigitalSreeni
      @DigitalSreeni  2 ปีที่แล้ว +1

      Read one mask at a time for each image, change pixel values for a given mask to a specific number, do this for all masks representing all classes, save the numpy array into a single png. I am sure I have done this in one of my videos but I haven't done an exclusive video on merging individual masks into a single multiclass mask.

  • @manuelflores8220
    @manuelflores8220 2 ปีที่แล้ว +2

    Thank you for the effort to prepare such great material for your ppt every week. I've been learning a lot watching your videos and I am getting more interested in semantic segmentation models.
    I would really appreciate it if you can prepare or give us a kick idea or code about unsupervised semantic segmentation, please. Thank you in advance!

  • @md.abusayed2362
    @md.abusayed2362 2 ปีที่แล้ว

    Hello Sir.
    Is there any problem if i use 16 bit mask with 8 bit image for unet training purpose?

  • @chun5310
    @chun5310 2 ปีที่แล้ว

    Is the images data also available?

  • @indasetyawati6855
    @indasetyawati6855 2 ปีที่แล้ว

    sir can u make tutorial for classification with 3D image and multiclass. i look the people make classification 3D images use binner so in here i hope u can help me about this.

  • @parthibanpana9905
    @parthibanpana9905 2 ปีที่แล้ว

    thank you sir, this is so interesting, can i use this one for fish movement in the tank sir?

  • @engynabil180
    @engynabil180 2 ปีที่แล้ว

    is stardist working with 3D dataset , it will be highly appreciated if you show us how tomuse it with 3d dataset

    • @DigitalSreeni
      @DigitalSreeni  2 ปีที่แล้ว

      StarDist github has good examples for 3D: github.com/stardist/stardist/tree/master/examples/3D

  • @xxxtj3679
    @xxxtj3679 2 ปีที่แล้ว

    Can you make videos on unsupervised semantic segmentation. It would be greatly appreciated. Thankyou

  • @md.sakibhossainshovon7799
    @md.sakibhossainshovon7799 2 ปีที่แล้ว

    @DisitalSreeni Could you please reply. I have a humble request. If I want to segment whole images (not single image) using starDIST of a dataset what should I do? Similarly, for tracking as well. Plz help. It's urgent.

  • @farnooshjoulaeian1550
    @farnooshjoulaeian1550 ปีที่แล้ว

    importing stardist's libraries makes kernel restart (jupyter)! I have stuck in this step

    • @farnooshjoulaeian1550
      @farnooshjoulaeian1550 ปีที่แล้ว

      it seems the problem is with tensorflow, the error is zsh: illegal hardware instruction ipython (mac M2)

  • @amnn8507
    @amnn8507 2 ปีที่แล้ว +1

    Thanks for the great videos you make. Could you please make a video about Self Supervised Learning (SSL) & Representation Learning and/or transformers as well?

  • @lakshmipriya7953
    @lakshmipriya7953 2 ปีที่แล้ว

    Thankyou so much for this presentation. Sir, please make a video on HoverNet for nuclei segmentation and classification.

  • @shubhamsongire6712
    @shubhamsongire6712 2 ปีที่แล้ว

    Hello Sir, please accept my request on LinkedIn. I am getting one error while implementing your code.