Water Atomic Modeling with VMD

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  • เผยแพร่เมื่อ 26 ก.ย. 2024
  • The "Solvent Builder" module in VMD (Visual Molecular Dynamics) software is a tool that allows users to generate water boxes for molecular dynamics simulations. It simplifies the process of adding solvent molecules, such as water, around a solute molecule or system. Technically, the below steps should be followed for atomic modeling of the water box using the "Solvent Builder" module:
    Step 1: Launch VMD.
    Step 2: Go to the "Extensions" menu and select "Modeling".
    Step 3: Choose "Solvent Builder" from the Modeling submenu.
    Step 4: Adjust the box size or dimensions to accommodate your system.
    Step 5: Specify any additional options or constraints if needed.
    Step 6: Click on the "Build" button to generate the water box.
    The water box will be displayed in the VMD graphics window. You can save the water box as a separate file for further analysis or simulation.
    learn more: lammpstube.com/

ความคิดเห็น • 3

  • @weirder5746
    @weirder5746 9 หลายเดือนก่อน

    Why is it saying missing required information when i do same things

    • @lammpstube
      @lammpstube  9 หลายเดือนก่อน

      Please use 1.9.2 version of VMD software and follow this instructional video

    • @weirder5746
      @weirder5746 9 หลายเดือนก่อน

      @@lammpstube thank you it worked