Spatial Transcriptomics - Part 6.1: Spatial Gene Set Enrichment Analysis

Hello, Everyone.
In this video I talk about performing the first part of spatial gene set enrichment analysis using the Hallmark Gene Sets in MSigDBr package. This is the first of 2 part analysis that looks to perform cell-level gene set enrichment and then identify FOVs that show spatial enrichment of those cells with high scores.
GitHub page with the scripts for this project:
github.com/ACS...
Spatial enrichment function - Source: spaitalGE
github.com/Fri...
My modified spatial enrichment function for my paper:
github.com/Fri...
GSVA Bioconductor and vignette:
www.bioconduct...
www.bioconduct...
MSigDBr CRAN page:
cran.r-project...
Progress bar mcapply package CRAN page:
cran.r-project...
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