very useful tutorial, it will be very helpful if you provide YASARA: Receptor-Ligand Local Docking|Complete tutorial AND a full tutorial on MD simualtion on YASARA Thanks again for this tutorial
Hello two quick question! I cannot find the energy minimization on my Yasara like yourself. Also when selecting macro to play, my computer does not show the dock_files . How can i download these?
Very nicely explained mam.. thanks ..Just have two queries mam: 1 Is Yasara is a free software?? 2 How to see the interactions and how to save the quality images of interactions in JPG or other formats for publication purpose.
No sir, It's not a free software. But it's not that costly. For academic purposes, you get a additional concession too. And you can install in n number of systems.
I am working with yasara in linux. But in my case i dont find the energy minimization n docking options as yours.. is it bcz of a free version?? . And can we dock protein and a metal ion using yasara??
straight forward docking Procedure. Thank you
Simple and clean explanation of docking procedure. Thanks
Glad you liked it
very useful tutorial,
it will be very helpful if you provide
YASARA: Receptor-Ligand Local Docking|Complete tutorial
AND a full tutorial on MD simualtion on YASARA
Thanks again for this tutorial
Noted
Please video about step by step molecular dynamic
Ma'am please upload video on molecular dynamics simulation
very nice , tanks mam, can you make video to ensamble docking in yasara
Will upload soon
Hello two quick question! I cannot find the energy minimization on my Yasara like yourself. Also when selecting macro to play, my computer does not show the dock_files . How can i download these?
Are you using the paid version?
Very nicely explained mam..
thanks
..Just have two queries mam:
1 Is Yasara is a free software??
2 How to see the interactions and how to save the quality images of interactions in JPG or other formats for publication purpose.
No sir, It's not a free software. But it's not that costly. For academic purposes, you get a additional concession too. And you can install in n number of systems.
Regarding your 2nd query, I'll post a video in a short while
there are several version of YASARA, did you use the basic one?
"Could you tell me how to change the solvent to methanol, water, or ethanol?"
Can this program be used to find the amount of binding affinity produced?
Yes
Hello. After doing docking simulation for a drug to its target, I got a very high RMSD. Could you tell me what it signifies and is it a bad thing?
I am working with yasara in linux. But in my case i dont find the energy minimization n docking options as yours.. is it bcz of a free version?? .
And can we dock protein and a metal ion using yasara??