Workflows and Scripts

Zbigniew Mikulski shows how to use the Workflow Tab to apply the same analysis methods to multiple images, saving you time and reducing errors.
Files drive.google.com/drive/folder... and a related presentation docs.google.com/presentation/... are available for download.
0:00 Creating Scripts for batching by Zbigniew Mikulski
0:10 Variations in images
1:29 Setting Stain Deconvolution
3:12 Optimizing H score measurement
6:31 Looking at the workflow tab
6:43 Creating a script from the workflow
7:05 The Set List
8:07 Editing the created script
12:54 Running the script
14:24 Why have a separate training project
15:51 Run for Project
16:24 Comparing Results
18:00 Exporting Results to spreadsheet
20:23 Results from non-experts show similar trends
If you have any questions about the videos or the training course, please ask on this image.sc forum post. forum.image.sc/t/qupath-train...
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Please follow this document to get everything you need (software, files, cheat sheets, and additional resources):
docs.google.com/document/d/1V...