In the TKcon, make a selection, >> set sel [atomselect top "all"] and then shift the structure with the moveby command (e.g. 10Å in the positive z-direction), >> $sel moveby "0 0 10"
load the entire trajectory, and make a selection (not water, for example), >> set sel [atomselect top "not water"] then write a sub trajectory, >> animate write dcd wow.dcd sel $sel waitfor all
In the TKcon, make a selection,
>> set sel [atomselect top "all"]
and then shift the structure with the moveby command (e.g. 10Å in the positive z-direction),
>> $sel moveby "0 0 10"
Where can I find the pdf you're using, or at least, the nanostructure input file you're opening into VMD?
Hello Sir, Can you tell me how to shift given structure in +ve or -ve direction (e.g. z-direction).
hello sir, can you tell me how to create sub trajectory file (dcd) from large trajectory file for selected atom selections
load the entire trajectory, and make a selection (not water, for example),
>> set sel [atomselect top "not water"]
then write a sub trajectory,
>> animate write dcd wow.dcd sel $sel waitfor all