Renaming our R package, updating RStudio and R, organizing code, and passing Check! (CC280)

Pat's had a change of heart on what to name our R package. We're dropping the 'e' and going with phylotypr! Aside from going through all of the steps to rename the package, we'll update RStudio and R, and do a better job of organizing our code. You'll see Pat use git both from within RStudio and within the termainal. There's a lot of great material you won't want to miss! This episode is part of an ongoing effort to develop an R package that implements the naive Bayesian classifier.
If you want to get a physical copy of R Packages: amzn.to/43pMR8L
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You can find my blog post for this episode at www.riffomonas.org/code_club/....
Check out the GitHub repository at the:
* Beginning of the episode: github.com/riffomonas/phyloty...
* End of the episode: github.com/riffomonas/phyloty...
#rstats #microbenchmark #vectors #rdp #16S #classification #classifier #microbialecology #microbiome
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0:00 Introduction
1:23 Updating R and RStudio
9:17 Cleaning up package root directory
13:57 Resolving Check issues for package
25:53 Renaming package to phylotypr

[@alboberry3097]

Hi Dr. Pat, your videos are extremely helpful for me to get started with bioinformatics! Thank you so much for all the wonderful works!!

[@Riffomonas]

my pleasure! thanks for tuning in 🤓

[@sven9r]

coming back after a long day at university your videos are a great escape from the postdoc hustle - while still learning! thank you

[@Riffomonas]

wonderful - thanks for still watching!

[@piezu.]

You can use "find" (grep) inside RStudio. The shortcut is Ctrl+Shift+F (windows).
This also shows the line numbers of the matches.

[@Riffomonas]

Thanks - I figured it must have a project wide search feature, but was too lazy to look.🤓 I typically only use command-F to search within a single file