Confocal image processing using Image J

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  • เผยแพร่เมื่อ 28 พ.ย. 2024

ความคิดเห็น • 32

  • @yidanjiang7599
    @yidanjiang7599 3 ปีที่แล้ว +1

    Save my day! Lat time it took me hours to align and display images and now only 1 minute everything down! Really Thank you!

  • @shazlir5415
    @shazlir5415 2 ปีที่แล้ว +1

    Do you know how to calculate the collagen fragmentation index for confocal microscopy?

  • @abirchakraborty1030
    @abirchakraborty1030 ปีที่แล้ว

    Hi, can you please make a video on how to use Orientation J for fibre orientation measurement?

  • @Mnga86
    @Mnga86 7 ปีที่แล้ว +3

    Many thanks for this video..when I press images to stack it convert the green one into red..and then when I open the original image and make a montage..the resulted montage would be two red images (one originally green) and one black image (not the composite image)..can you please tell me how to fix that?

    • @taylafaulmann6477
      @taylafaulmann6477 6 ปีที่แล้ว

      Hi there. I seem to be having the same issue. Have you figured out how to rectify it?

    • @Rockbocki
      @Rockbocki 6 ปีที่แล้ว

      Don't know if still needed.. I had the same. when you change the type of the image to what is should be (32bit or idk what you had), it converts back to greyscale and then you can color-merge to get the desired colors for the signals.

  • @caesaralexander1814
    @caesaralexander1814 6 ปีที่แล้ว +1

    the desktop picture is great!

  • @killwish_manish8367
    @killwish_manish8367 8 ปีที่แล้ว +2

    NICE one Arpan!
    Can u show how to deconvolve the confocal image stack with fiji and make it to 3D

    • @mcammer
      @mcammer 4 ปีที่แล้ว

      You need the raw data with correct metadata and no saturation to do this.

  • @KmeleoNCL
    @KmeleoNCL 3 ปีที่แล้ว +1

    How do you save pictures in RGB? Mine are in 'ND2' :c

  • @mcammer
    @mcammer 4 ปีที่แล้ว +2

    Confocal images should be saved in different channels, not as RGB, and not be saturated.
    See the recent Nature Methods paper by Jonkman et al.

    • @animatedbiologywitharpan
      @animatedbiologywitharpan  4 ปีที่แล้ว

      Cammer Michael I agree ,for quatification the raw bioformat file is important but for a quick display one can save the rgb image .....well for intensity quantification saturation is a problem but for displaying a structural feature it might not be an issue. But I agree to the point that while imaging the full dynamic range of the detector should be utilised

  • @lisbenavides
    @lisbenavides 6 ปีที่แล้ว +1

    Nice tutorial! I would like to know if you can put each image scale. Thanks

  • @surendra2836
    @surendra2836 3 ปีที่แล้ว +1

    Good one

    • @animatedbiologywitharpan
      @animatedbiologywitharpan  3 ปีที่แล้ว

      Please share my channel link with your friends and help me to reach big audience

  • @ESELILLOKITO
    @ESELILLOKITO 6 ปีที่แล้ว +1

    Is there you can put a download link for the images?

  • @katiastas3828
    @katiastas3828 6 ปีที่แล้ว +1

    hey, when i press stack all the pictures are green colour and the hyperstack just does not work :( PLS HELP

    • @animatedbiologywitharpan
      @animatedbiologywitharpan  6 ปีที่แล้ว +1

      We can chat on WhatsApp if you want 9987997041

    • @katiastas3828
      @katiastas3828 6 ปีที่แล้ว

      Arpan Parichha hey, can you just reply on here?

    • @animatedbiologywitharpan
      @animatedbiologywitharpan  6 ปีที่แล้ว

      Katia Stas I don’t understand the problem you are facing...can you elaborate..

  • @vituskademyinc.2896
    @vituskademyinc.2896 2 ปีที่แล้ว +1

    I understand CASA can be incorporated into ImageJ to analyze semen and sperm cells. Can you do a tutorial on that?

  • @thekonartis
    @thekonartis 7 ปีที่แล้ว

    Thanks man!

  • @ErrorUncertainty
    @ErrorUncertainty 5 ปีที่แล้ว

    Please don't save scientific image data as JPG files! Compression is not your friend

  • @iqrasafdar9386
    @iqrasafdar9386 2 ปีที่แล้ว

    please shair mail I'd