Fitting ligands into density with phenix.ligandfit

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  • เผยแพร่เมื่อ 11 ก.ย. 2024
  • Tom Terwilliger describes how to use the LigandFit tool in the Phenix GUI to fit a flexible ligand into density.
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    Reference:
    Terwilliger, T.C., Klei, H., Adams, P.D., Moriarty, N.W., Cohn, J.D. (2006). Automated ligand fitting by core-fragment fitting and extension into density. Acta Cryst. D62, 915-922.
    journals.iucr.o...

ความคิดเห็น • 4

  • @gp6848
    @gp6848 4 ปีที่แล้ว

    How can I use it for the CryoEM maps that are in .mrc format? while it is working for the real space refinement under cryoEM .

    • @PhenixTutorials
      @PhenixTutorials  4 ปีที่แล้ว

      You can use a map in .mrc format. Simply drag it into the "File path" box.

  • @ahmadfarizm3946
    @ahmadfarizm3946 3 ปีที่แล้ว

    where can I get the ccp4_mtz file ?

    • @PhenixTutorials
      @PhenixTutorials  2 ปีที่แล้ว

      The example data are shipped with the Phenix installation.