Please make a tutorial on How to prepare 3 layer network of compound-disease-pathway-target ? And how to export network from STITCH database to cytoscape?
What if we dont know the interaction pattern like here you already knew gene and interacting protein. but if we dont know how are protein are interacting in that case is there any method we can do analysis ?
Hi,I want to visualize my PPI network into cytoscape.But my ppI node are 661 and edges are 680 and seeds are 15.So i feel problem of visualizing it into cytoscape.Because of huge number of nodes and edges. So how can i visualize this .I mean to say I want to know the way that can visualize all the interacted nodes clearly. Clearly means all the labels are being clearly watched in manuscript.
Informative video. But sir my question is, how you prepared the excel sheet which one you upload in the cytoscape?
How do v prepare the input file... in Excel form which u showed....must v create it or is it a result file from a different software
Hello sir,
Could you please explain that how you have prepared and excel sheet? How you have differentiated between node 1 and node 2?
Thankyou
Please make a tutorial on How to prepare 3 layer network of compound-disease-pathway-target ? And how to export network from STITCH database to cytoscape?
Sir, From where the table of the excel sheet has been obtained?
informative
thanks..learnt alot
What if we dont know the interaction pattern like here you already knew gene and interacting protein. but if we dont know how are protein are interacting in that case is there any method we can do analysis ?
Thank you so much sir.
What is the utility? Same things can be done in string db
How to retrieve genes? I mean from which source did you take the genes?
I have some questions regarding network ecology.
Hi,I want to visualize my PPI network into cytoscape.But my ppI node are 661 and edges are 680 and seeds are 15.So i feel problem of visualizing it into cytoscape.Because of huge number of nodes and edges. So how can i visualize this .I mean to say I want to know the way that can visualize all the interacted nodes clearly. Clearly means all the labels are being clearly watched in manuscript.
Sir, how will we predict the results from network ? If I want to know possible toxicity generated by drug , then?
Cytoscape shows us the interaction, parameters which you are saying will require different tools.