How to calculate solvent accessible surface area (SASA) of a protein in VMD?

[@gloriacastaneda114]

Interesting!!!! I speak spanish but with legends of the vídeo its ok. Thanks!

[@Mohamedshehata]

I don''t know spainish :( , feel free to ask me if you face a problem , buena suerte
amigo :)

[@deepakshrestha4924]

can we use this to calculate solvent accessible area of secondary structure of tRNA. Also do you have some detail video?

[@camillaromagnoli9060]

Hi, thanks for the video.
does it refer to the TOP protein if you have more than one open, right?

[@Mohamedshehata]

I would use script if you have more than one protein loaded

[@srinathkompella9334]

Thanks for the nice video, Mohamad Shehata.
I have a mixture of methanol and water as the solvent. Could you please help me with finding the solvent probe radius in that case? Thank you in advance.

[@haiderfarouq1817]

How would you convert SASA to a % from them values?

[@AmitKumar-yo2qo]

Hi Mohamed, Please can you explain the role of substracting restrict $sel?

[@sagararyal3698]

Could you please calculate SASA, RMSF,RMSD using vmd timeline?

[@Mohamedshehata]

why ?

[@sagararyal3698]

@@Mohamedshehata I want to learn vmd timeline, so could you make tutorial using vmd timeline.

[@Ahmed87810]

Please send to the scripts of sasa

[@iffatazim6722]

Pls sir explain in hindi

[@Mohamedshehata]

I am not Indian !