Affymetrix raw genotype file to PLINK

Here I show how to transform Affymetrix Thermo Fisher raw genotype files (final reports) to #PLINK format
Script from the video: github.com/Gen...
Data from the video: github.com/Gen...
Many thank to Kashif Khan for the cooperation on this!

[@georgewanjala4605]

Thank you so much. Is it possible to merge the Affymetrix-based plink file with illumina genotypes?

[@GenomicsBootCamp]

Yes, but only for SNPs that are on both chips. You have to extract the common SNPs (same SNP names) and then merge

[@aadaakoo]

Thank you !!. It is really helpful and basis for beginners like us .

[@kashifkhan-xr8fj]

Really Very helpful 👍.... Thanks a lot sir 🙏