Hi Alex, very interesting videos. We work on similiar stuff, so I am probably going to watch all of them. Do you have any experience with integrating high res spatial data with scRNA or spatial protein assays in a imputation or "batch correction" setting? Thanks!
Hey. Thanks much. I don't have experience in that yet but we have spatial protein from orthogonal sections of our spatial tramscriptomic data and I just need time to learn how to do integration. We also have bulk DNA and RNA from them so all the data is there. I'm working with a clinical fellow right now to try and classify cells based on transcript interaction at the cell level (looking at interaction of different transcripts within a cell). Idea is that location plus counts can help refine cell types. Data is very sparse though.
It is great to understand the difference between supervised and non supervised phenotyping in a practical way. Thanks a lot Alex !
Hi Alex, very interesting videos.
We work on similiar stuff, so I am probably going to watch all of them.
Do you have any experience with integrating high res spatial data with scRNA or spatial protein assays in a imputation or "batch correction" setting?
Thanks!
Hey. Thanks much.
I don't have experience in that yet but we have spatial protein from orthogonal sections of our spatial tramscriptomic data and I just need time to learn how to do integration. We also have bulk DNA and RNA from them so all the data is there.
I'm working with a clinical fellow right now to try and classify cells based on transcript interaction at the cell level (looking at interaction of different transcripts within a cell). Idea is that location plus counts can help refine cell types. Data is very sparse though.
woahhhhh