Gene Ontology Enrichment Analysis using ShinyGO (an R Shiny Server)

แชร์
ฝัง
  • เผยแพร่เมื่อ 11 ก.ย. 2024
  • This tutorial explains how to perform Gene Ontology (GO) Enrichment Analysis using ShinyGO (a cloud R Shiny server). ShinyGO is an online graphical interface tool for gene-set enrichment analysis. It is an open-source program written using R language and enveloped with Shiny and BioConductor packages. The online tool runs on the Shiny cloud server; whereas the source code is hosted at the GitHub repository.
    In this tutorial, I have used the Gene Set Enrichment Analysis (GSEA)/Molecular Signatures Database (MSigDB) to retrieve a list of gene IDs for human liver cancer. Moreover, I have used the ShinyGO 0.77 (version 0.77) tool for gene enrichment analysis. The current beta release is ShinyGO 0.80 (as on July 5, 2023).
    The ShinyGO tool produces following results: Gene Ontology (GO) Enrichment, Fold Enrichment Chart, Hierarchical Tree Diagram, Gene Network Graph, KEGG Pathway Map, Genes Position, Density & Bar Plot, Genome Position, Motif in Promoter, STRING Protein-Protein Interaction (PPI) Network of Differently Expressed Gene (DEG).
    Resource URLs:
    ShinyGO: bioinformatics....
    ShinyGO (Mirror): ge-lab.org/go/
    ShinyGO (GitHub): github.com/gex...
    ShinyGO (Database): bioinformatics....
    GSEA: www.gsea-msigd...
    ---------------------------------------------------------------------------------------
    My Blog: www.biob.in
    Website: www.biogem.org
    My Vlog: / ashokkumarbioit
    TH-cam Handle: / @akbit
    My GitHub: github.com/Ash...
    ---------------------------------------------------------------------------------------
    #BioGem #biogem.org #BioBIN #biob.in #Bioinformatics #R #Ontology #Shiny #GSEA #MSigDB #AKBIT ‪@AKBIT‬

ความคิดเห็น • 4

  • @FizzaJawad-zx7ye
    @FizzaJawad-zx7ye 3 หลายเดือนก่อน +1

    thank you soooo much this video helped me a lotttttttt

    • @AKBIT
      @AKBIT  3 หลายเดือนก่อน

      Thank you for your valuable feedback 😊

  • @tallatnaz
    @tallatnaz ปีที่แล้ว +1

    i wish you could explain this in Hindi as well.....

    • @AKBIT
      @AKBIT  11 หลายเดือนก่อน

      Sorry, l don't know Hindi 😉