Introducing the Biopython SeqIO Module: Reading FASTA files

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  • เผยแพร่เมื่อ 3 ธ.ค. 2024

ความคิดเห็น • 30

  • @princeleow2626
    @princeleow2626 ปีที่แล้ว +1

    The little detail about substring slicing in python was a major part that I overlooked, and actually genuinely helped me fix a mistake for my master's project.
    These python/biopython videos are amazing - thank you so much for making them, and that they're freely available. 🙏

  • @cheasequahblevins4560
    @cheasequahblevins4560 2 ปีที่แล้ว +1

    Thank you for creating these tutorials-- they're clear, concise and have spared me so much time and frustration!

  • @yangx8448
    @yangx8448 3 ปีที่แล้ว +4

    this video is really helpful for bioinformatics beginner! plz keep making new videos!

    • @ProfessorHendrix
      @ProfessorHendrix  3 ปีที่แล้ว +1

      I have posted a couple new ones recently, another one later tonight! Thanks for watching!

  • @juliojaviera5963
    @juliojaviera5963 6 หลายเดือนก่อน

    Thanks a lot for these videos ❤

  • @thebiomicroguy
    @thebiomicroguy 2 ปีที่แล้ว

    I enjoyed to the end, it helped a lot.
    Thank you Prof.

  • @tjames22123
    @tjames22123 3 ปีที่แล้ว +1

    Thank you very much Pro Hendrix! After properly importing Bio everything works! :)

  • @amritakannan6267
    @amritakannan6267 3 ปีที่แล้ว +1

    Really very informative and it helped me a lot. Thank you so much Prof. Hendrix!

  • @annathunguye9354
    @annathunguye9354 3 ปีที่แล้ว

    Thank you Prof. Hendrix

  • @johnmandrake8829
    @johnmandrake8829 3 ปีที่แล้ว

    thank you very much Professor Hendrix

  • @jenithmehta9603
    @jenithmehta9603 ปีที่แล้ว

    Good tutorial, thanks.

  • @felixfisher6438
    @felixfisher6438 3 ปีที่แล้ว +1

    you are great at explaining ! You got yourself a new sub :)

  • @juliangrandvallet5359
    @juliangrandvallet5359 2 ปีที่แล้ว

    Very helpful! thanks!!

  • @amalsenevirathne1867
    @amalsenevirathne1867 2 ปีที่แล้ว

    Thank you very much, professor. It was very useful.

  • @bedo8852
    @bedo8852 2 ปีที่แล้ว

    thank you very much on this great content it is really very helpful

  • @mollyshi2968
    @mollyshi2968 3 ปีที่แล้ว

    Very useful video! Thank you so much!

  • @zhongqisun9082
    @zhongqisun9082 3 ปีที่แล้ว

    Really useful video!!! Thanks!!! Better than lectures in our college :) Hope you could update more!

    • @ProfessorHendrix
      @ProfessorHendrix  3 ปีที่แล้ว

      just posted a few more, sorry for taking so long, more to come...

  • @jpark7524
    @jpark7524 7 หลายเดือนก่อน

    very good

  • @nadaalruwaythi8200
    @nadaalruwaythi8200 3 ปีที่แล้ว +2

    Dr.hendrix
    I'd like to continue the sequence in order to convert it to Binary; how can I do that? After the break, continue.
    Thank you.

    • @ProfessorHendrix
      @ProfessorHendrix  3 ปีที่แล้ว +1

      not sure...why do you want to convert to binary, and what sort of encoding? A=00, C=01, G=10, T=11 or something different?

    • @lest7522
      @lest7522 3 ปีที่แล้ว

      did you manage yo do it in the end ?

  • @yasinrifozuddin7124
    @yasinrifozuddin7124 3 ปีที่แล้ว +2

    yo professor hendrix where do i download wget?

    • @ProfessorHendrix
      @ProfessorHendrix  3 ปีที่แล้ว

      it is a standard linux program, are you on a linux server? My videos are all on a linux system, so need to use that. For Mac and Windows there may be similar programs, like Mac has "curl" I think.

  • @larrysizemore2891
    @larrysizemore2891 3 ปีที่แล้ว

    Hello! I'm in the terminal and have retrieved the fasta sequence, but now I can't exit to get back into the home directory and then get to python...I'm so embarassed.

    • @ProfessorHendrix
      @ProfessorHendrix  3 ปีที่แล้ว

      You will need to use "cd" to change directories. You may want to use "pwd" to see what directory you are currently in. Maybe I need a video on navigating a GNU/Linux system? at any rate, "cd ~" will take you to your home directory

  • @omotosoolatunde9139
    @omotosoolatunde9139 3 ปีที่แล้ว +2

    Thank you Professor Hendrix. I have this file "Homo_sapiens.GRCh38.cds.all.fa" from Ensembl but I need to extract the longest cds transcript. I would appreciate your assistance, your videos have been extremely helpful

    • @ProfessorHendrix
      @ProfessorHendrix  3 ปีที่แล้ว +2

      You could check out my video on getting the longest ORF, then append ORF from each transcript to a list. Then sort the list. Does this help?

  • @meaada9152
    @meaada9152 ปีที่แล้ว

    I need any one help me in bio informatic

  • @meaada9152
    @meaada9152 ปีที่แล้ว

    Can you help me please😢😢😢😢😢