Thanks for your detailed commentary and uploads. Can I have the parent video before this, how to start from scratch....Like importing the dicom images and changing to Bitmap and orientation of the samples.....
@@ProfLiebertNogueira Iam newbie, I would like to know if the same can be applied to the CBCT slices of resolution 200+ micrometers, will i still be able to tap the bone trabecular microarchitecture. please suggest me a software Prof
@@drarishiya Maybe this procedure I showed here will not be suitable to separate those bone components in a much worse resolution dataset. But it is worth trying. You can try Dragonfly, which is a commercial software but if you are in an academic institution you can apply for a licence for free. Here are some webinars (www.theobjects.com/dragonfly/learn-recorded-webinars.html) and short explanation videos of how use it. Here specific for bone analysis (th-cam.com/video/MEh1nQNgEms/w-d-xo.html). Hope it helps. =)
Thank you Liebert. I used your method and got the VOI of trabecular bone, but I cannot do 2D/3D analysis, because there was an dialog box: Input image must be black/white. Do you know how to fix it? Thanks!
You must have been missing some part of the tasklist that needs to be thresholded, or have put some reload dataset before any process that needs a binary image.
![FIJI (ImageJ): Bone Analysis with BoneJ2 [Trabecular Bone]](/img/n.gif)
Thanks for your detailed commentary and uploads. Can I have the parent video before this, how to start from scratch....Like importing the dicom images and changing to Bitmap and orientation of the samples.....
Hi, please refer to this video for reorienting the dataset. You can save them rotated images in the format you wish.
th-cam.com/video/9i2mBFTeiYU/w-d-xo.html
@@ProfLiebertNogueira Iam newbie, I would like to know if the same can be applied to the CBCT slices of resolution 200+ micrometers, will i still be able to tap the bone trabecular microarchitecture. please suggest me a software Prof
@@drarishiya Maybe this procedure I showed here will not be suitable to separate those bone components in a much worse resolution dataset. But it is worth trying.
You can try Dragonfly, which is a commercial software but if you are in an academic institution you can apply for a licence for free.
Here are some webinars (www.theobjects.com/dragonfly/learn-recorded-webinars.html) and short explanation videos of how use it. Here specific for bone analysis (th-cam.com/video/MEh1nQNgEms/w-d-xo.html).
Hope it helps. =)
Thank you so much, will update after i make a try.
Thank you very much Liebert. I was wondering, what we do if holes are still presented after ROI Shrink-wrap?
Hi Alejandro. You might need to try using the option "stretch over holes" in the ROI Shrink-wrap.
Thank you Liebert. I used your method and got the VOI of trabecular bone, but I cannot do 2D/3D analysis, because there was an dialog box: Input image must be black/white. Do you know how to fix it? Thanks!
You must have been missing some part of the tasklist that needs to be thresholded, or have put some reload dataset before any process that needs a binary image.
Thank you for this, Can you help me get access to CTan software?
Hi dear Layla. Unfortunately this software is licensed. You could try and contact Bruker MicroCT to check for it.