thank you for the amazing tutorial! If there is no problem perhaps there is a way you could share or suggest me a way for downloading the dataset? if so, my mail is: macwolfz@gmail.com
At this point I am just binge watching your videos like a TV show... Don't have time to follow the analysis right now, but I am learning a lot anyway just by watching it. Thanks, man.
The previous finance series also forced my hand into using an ipython notebook. I still dislike them, I develop outside of them, but can still do the tutorial writeup inside of one, and then everyone is happy. Maybe more notebooks to come. ...maybe.
To get rid of the header click on the view menu and select what you want. If you are not satisfied just change the css from from chrome. You can make notebooks appear and work however you want by editing the css in place. Hope that helps. Also, thanks for sharing this great stuff.
Harrison, I'm totally lost in this tutorial. You said we could use the virtual environment on Kaggle. I found the Data Science Bowl comp and created a new Python notebook but I don't see where to enter code. My options are Notebook, Code, Data, Comments, Log, Versions, Options and off to the right, Fork Notebook and Edit Notebook. When I press Edit Notebook, I see the input files but the space around notebook is blank and just has this spinning wheel forever like something is trying to load. Maybe something wrong with the website? I did try pressing fork notebook and got a 502 error, so maybe the site is just acting up. Not very familiar with Jupyter Notebook. Man, times like these, you really appreciate how simplistic IDLE is.
Hi, thank you for the tutorial. Really awesome! May I ask you on how to use / extract / convert nifti files to dicom files in Jubyter (*.nii to *.dcm) and then following your tutorial from there? Is there any command to run nifti files in Python? Thanks a lot!
i have a question please and i hope you give me an answer here in a comment or in the next Q and A i m really in love with python programming now and it's all because of you i just started but i want to be able to make AI stuff with neural networks and deep learning and data analytics but every time i search for the requirements i see you need to know math like calculus linear algebra and probability and to be honest i m not good at math like at all i m a geologist what should i do what is your advice should i stop and get into math tutorials first or do something else ?
my 2 cents: if you just want to APPLY neural networks or other ML algorithms based on examples/tutorials of what other people have done, there is no need. if you, however, get to a point where you want to create your own models and customize algorithms, yes... you should get into the math. But keep in mind... at least for deep learning the mathematics is not that complicated. A neural network is basicaly a bunch of matrix dot products and then some functions which change their shape in the end (activations). For deep learning you need to know a bit about linear algebra (matrix multiplaction/dot product, mostly) and at least a notion of calculus (you can get the derivatives needed on the web, no need to memorize all the rules). If you are on the first group, don't freak out. Just get some tutorials and start testing what you learnt on new datasets. Don't bother about the math until you need it.
thank you so much that was really helpful brother and i actually i m not that kind of guys that will follow a tutorial and do the same thing i want to implement what i've learned in my own ideas and for matrix i have a basic knowledge i just need to refresh my memory a bit because it was one of the subjects we learnt in college but for the calculus and the others i don't even know what are they. so i think i need to start both in the same time. do you suggest any good resources online for beginners in these math subjects ?.
You should know the basics of how the math works, mostly just to understand relationships. For example, I do not know how to really code convex optimization as a quadratic programming equation, but I understand what's happening when I use a library to do convex optimization for me. It's just slowly tweaking variables for me to optimize based on certain constraints, and the learning rate is responsible for how quickly it might figure it out. A too low learning rate might take forever to train, or even get stuck in a local maxima, and too high might just miss it all-together....etc. You're rarely going to need to write out the full equations to do any of the calculus, but you just want to understand what the calculus is doing, since you absolutely do need to know how to tweak the variables, and what they're doing when you do it.
How to read data from a zip file inside kaggle kernel? I tried by import zipfile command and pass in the URL for the dataset like this: zf = zipfile.ZipFile('../inputs/train_1.zip') command but it gives me an error saying that no such file or directory. What should I do to use that zip file in the kernel?
you rock for posting this info. this is super helpful just to get a lay of the land on kaggle and hopefull this will help me test my new ML rig with the kaggle python docker container and nvidia-docker ... if I am setting myself up for failure any tips would be greatly appreciated.
Hello, I am following Your videos to implement this CNN but the Dataset I have found contains images in .MHD and >RAW format and all in one folder. So could You tell me how may I convert from .MHD to .DCM or perhaps If You have the dataset available, could You share a link to it so that I may download?
Thanks man, an amazing tutorial. i'm doing my project on MRI brain classification using cnn. datasets are in .mha file format. I'm using simpleITK library .But how can i generate images from .mha file?
HI Sentdex, I have BRATS 2015 dataset in Nifti format . Can you please give me some pointers on how to input NIFTI images into Convolutional Neural NEtworks....
@sentdex,,,, Greetings Mr. HarrisonI am requesting regarding your video series on TH-cam where You are making a CNN to detect Lung Cancer from Dicom Images. I wanted to ask whether You have the dataset available with You right now? If so, I would be very grateful if You could share it with me via a Link from which I may download it. The reason I am asking you is because I have downloaded the dataset online but It is in .MHD and .RAW format while the dataset You are using in your video is in .DCM format and I haven't found anyway regarding how to convert it from MHD to DCM. Therefore I am requesting your help, hoping to hear from you soon. thank in advance....................
whichever you personally like best. I use straight python, and IDLE (which comes with your installation of Python) on Windows. I use sublime on ubuntu with desktop, and then nano when headless.
Hey sir it would be great if you could make a playlist regarding GANNs, SRGANN, CycleGANN, DISCOGANN, DCGANN and many more, coz the way you explain sir, i could keep on watching them till i die Just a reandom subscriber try: import LOVE as love from love.love_till_death import HEART myList = ["S", "E", "N", "T", "D", "E", "X"] for i in myList: print(i) print("LOVE YOU sentdex") counter = counter + 1 if counter == len(myList): try: print("LOVE YOU SIR") finally: break except Exception as ex: print("LOVE YOU SENTDEX") print("AI IS THE NEXT WAY OF LIVING") print("AS LONG AS PEOPLE LIKE HIM EXISTS") exit() finally: print("STAY SAFE AND DO WEAR MASK AMIDST COVID") print("Thank you all who have seen this") print("SIR, STAY SAFE AND DO TAKE CARE") print("BYE!!!!!!!!!!!!!!!!!!")
HI Sentdex, I have BRATS 2015 dataset in Nifti format . Can you please give me some pointers on how to input NIFTI images into Convolutional Neural NEtworks....
Associated Kernel for these tutorials: www.kaggle.com/sentdex/data-science-bowl-2017/first-pass-through-data-w-3d-convnet
hi!
Can you share code for this . dicom slides to STL conversion?
Sadly the data is no longer available :(
can you please share dataset : shad.momtahen@gmail.com
can you please share dataset: arifinmaftukhatul@gmail.com
thank you for the amazing tutorial!
If there is no problem perhaps there is a way you could share or suggest me a way for downloading the dataset?
if so, my mail is: macwolfz@gmail.com
At this point I am just binge watching your videos like a TV show... Don't have time to follow the analysis right now, but I am learning a lot anyway just by watching it. Thanks, man.
dude, you're in the zone when doing this. good stuff!
Man, you are awesome! I was looking for some code for reading DICOM files and I found that you have this video (and even a Kaggle competition).
These are excellent videos that should have 10x more likes on them!
Amazing tutorial, can't expect better than this.
I saw that jupyter notebook. In one of YOUR videos. I got emotional :')
The previous finance series also forced my hand into using an ipython notebook. I still dislike them, I develop outside of them, but can still do the tutorial writeup inside of one, and then everyone is happy. Maybe more notebooks to come. ...maybe.
To get rid of the header click on the view menu and select what you want. If you are not satisfied just change the css from from chrome. You can make notebooks appear and work however you want by editing the css in place. Hope that helps.
Also, thanks for sharing this great stuff.
Just want to quickly point out that even though opencv is imported under the name "cv2", you actually have to do "pip install opencv-python"
Great tutorial! My compliments!
Dear Sentdex!
Isn't it be better to use x.SliceLocation instead of x.ImagePositionPatient[2] ?
how to load HDR files in python , I need to load 3D MRI scans which are in .hdr format
Harrison, I'm totally lost in this tutorial. You said we could use the virtual environment on Kaggle. I found the Data Science Bowl comp and created a new Python notebook but I don't see where to enter code. My options are Notebook, Code, Data, Comments, Log, Versions, Options and off to the right, Fork Notebook and Edit Notebook.
When I press Edit Notebook, I see the input files but the space around notebook is blank and just has this spinning wheel forever like something is trying to load. Maybe something wrong with the website? I did try pressing fork notebook and got a 502 error, so maybe the site is just acting up. Not very familiar with Jupyter Notebook. Man, times like these, you really appreciate how simplistic IDLE is.
Can you please share the dataset for this asap?
Can you give me the link of next video?
Cool!! Keep up the good work!!!
Hello, can you please provide me with the link to download the dataset for practice? I couldn't find it on Kaggle
Hi, thank you for the tutorial. Really awesome!
May I ask you on how to use / extract / convert nifti files to dicom files in Jubyter (*.nii to *.dcm) and then following your tutorial from there? Is there any command to run nifti files in Python?
Thanks a lot!
i have a question please and i hope you give me an answer here in a comment or in the next Q and A i m really in love with python programming now and it's all because of you i just started but i want to be able to make AI stuff with neural networks and deep learning and data analytics but every time i search for the requirements i see you need to know math like calculus linear algebra and probability and to be honest i m not good at math like at all i m a geologist what should i do what is your advice should i stop and get into math tutorials first or do something else ?
my 2 cents: if you just want to APPLY neural networks or other ML algorithms based on examples/tutorials of what other people have done, there is no need.
if you, however, get to a point where you want to create your own models and customize algorithms, yes... you should get into the math.
But keep in mind... at least for deep learning the mathematics is not that complicated. A neural network is basicaly a bunch of matrix dot products and then some functions which change their shape in the end (activations).
For deep learning you need to know a bit about linear algebra (matrix multiplaction/dot product, mostly) and at least a notion of calculus (you can get the derivatives needed on the web, no need to memorize all the rules).
If you are on the first group, don't freak out. Just get some tutorials and start testing what you learnt on new datasets. Don't bother about the math until you need it.
thank you so much that was really helpful brother and i actually i m not that kind of guys that will follow a tutorial and do the same thing i want to implement what i've learned in my own ideas and for matrix i have a basic knowledge i just need to refresh my memory a bit because it was one of the subjects we learnt in college but for the calculus and the others i don't even know what are they. so i think i need to start both in the same time. do you suggest any good resources online for beginners in these math subjects ?.
You should know the basics of how the math works, mostly just to understand relationships.
For example, I do not know how to really code convex optimization as a quadratic programming equation, but I understand what's happening when I use a library to do convex optimization for me. It's just slowly tweaking variables for me to optimize based on certain constraints, and the learning rate is responsible for how quickly it might figure it out. A too low learning rate might take forever to train, or even get stuck in a local maxima, and too high might just miss it all-together....etc.
You're rarely going to need to write out the full equations to do any of the calculus, but you just want to understand what the calculus is doing, since you absolutely do need to know how to tweak the variables, and what they're doing when you do it.
Where can you get the dataset now?
Hey man! Did you get the dataset? If yes can you provide me the link to download the data. Thank you.
@@hardikjain1659 Please post the link here if you've found it. Thanks
@@hardikjain1659 Hey bro, if you have the dataset please share me : rajesh120228@gmail.com
Thank you
How to read data from a zip file inside kaggle kernel? I tried by import zipfile command and pass in the URL for the dataset like this: zf = zipfile.ZipFile('../inputs/train_1.zip') command but it gives me an error saying that no such file or directory. What should I do to use that zip file in the kernel?
you rock for posting this info. this is super helpful just to get a lay of the land on kaggle and hopefull this will help me test my new ML rig with the kaggle python docker container and nvidia-docker ... if I am setting myself up for failure any tips would be greatly appreciated.
Hello, I am following Your videos to implement this CNN but the Dataset I have found contains images in .MHD and >RAW format and all in one folder. So could You tell me how may I convert from .MHD to .DCM or perhaps If You have the dataset available, could You share a link to it so that I may download?
do you know the names of the attributes? I have the files and I asked by email, but they didn't answer me. it's for college, it's for study
i used the same code as above but when I give len(patients) I get only 20 and not 1595 . Any reason behind this?
Maybe a kaggle tutorial for starters (leaf recogn. ,cats and dogs)?Thanks,Regards
Can you share the link of the dataset?
I know it is to late now, but where can I find the data for this? I think in Kaggle is no longer available.
Hey, did you find the dataset for this?
Kindly make a tutorial on nifti images
Where can I get this data nowadays? Just checked Kaggle page but the data is no longer available there.
www.kaggle.com/c/data-science-bowl-2018/data
Where can I find this data?
did you find the data?
@@bryanttello7142 I need that data please reply if you have it. Thanx
@@chakravarthichowdary3587 not yet
hello its a good tutorial but data-set is not available on kaggle site so share the link please do the need full
www.kaggle.com/c/data-science-bowl-2018/data
Thanks man, an amazing tutorial. i'm doing my project on MRI brain classification using cnn. datasets are in .mha file format. I'm using simpleITK library .But how can i generate images from .mha file?
make a tutorial on nifti images please
Hello please what is ImagePositionPatient ? a function or what?
this should help: dicom.innolitics.com/ciods/ct-image/image-plane/00200032
HI Sentdex,
I have BRATS 2015 dataset in Nifti format . Can you please give me some pointers on how to input NIFTI images into Convolutional Neural NEtworks....
I also want to access Brats 15 mha file.have you got solution
Me too...
@sentdex,,,, Greetings Mr. HarrisonI am requesting regarding your video series on TH-cam where You are making a CNN to detect Lung Cancer from Dicom Images. I wanted to ask whether You have the dataset available with You right now? If so, I would be very grateful if You could share it with me via a Link from which I may download it.
The reason I am asking you is because I have downloaded the dataset online but It is in .MHD and .RAW format while the dataset You are using in your video is in .DCM format and I haven't found anyway regarding how to convert it from MHD to DCM. Therefore I am requesting your help, hoping to hear from you soon.
thank in advance....................
I am unable to install pydicom in Anaconda. Can you guide me how i can do that?
I don't personally use anaconda. I believe, in place of "pip install xyz" you use "conda install xyz"
Which IDE or software do you recommend?
whichever you personally like best. I use straight python, and IDLE (which comes with your installation of Python) on Windows. I use sublime on ubuntu with desktop, and then nano when headless.
Thanks!
Hi can you send me the data please i need it for my thesis
Did you get the data?
"yay, data science"
sir i need the data badly for my graduation project do you have it.
Not my data to distribute. Not sure why youd need this exact set to graduate unless you're just copying this project
how can i copy a project using the dataset i wanna the dataset to apply my own prepossessing & classification schema.
Sentdex, I also need the data to follow your steps. If I cannot replicate your results, there would be no point in watching your videos.
please don't be so childish , we are seeing your video with a serious mood but you make us bother by your attitude, otherwise you are good teacher
There's one thing we can do, you know, just QUIT! WHAT??
vai tui hashis na to plz , baal marka hashi dekhlei bal mejaj kharap hoy
Hey sir it would be great if you could make a playlist regarding GANNs, SRGANN, CycleGANN, DISCOGANN, DCGANN and many more, coz the way you explain sir, i could keep on watching them till i die
Just a reandom subscriber
try:
import LOVE as love
from love.love_till_death import HEART
myList = ["S", "E", "N", "T", "D", "E", "X"]
for i in myList:
print(i)
print("LOVE YOU sentdex")
counter = counter + 1
if counter == len(myList):
try:
print("LOVE YOU SIR")
finally:
break
except Exception as ex:
print("LOVE YOU SENTDEX")
print("AI IS THE NEXT WAY OF LIVING")
print("AS LONG AS PEOPLE LIKE HIM EXISTS")
exit()
finally:
print("STAY SAFE AND DO WEAR MASK AMIDST COVID")
print("Thank you all who have seen this")
print("SIR, STAY SAFE AND DO TAKE CARE")
print("BYE!!!!!!!!!!!!!!!!!!")
HI Sentdex,
I have BRATS 2015 dataset in Nifti format . Can you please give me some pointers on how to input NIFTI images into Convolutional Neural NEtworks....